View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9802_high_3 (Length: 434)
Name: NF9802_high_3
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 28900491 - 28900068
Alignment:
| Q |
1 |
taatttcaagtgtcataaatccttagagtgcattgcatttagcacttttgatttcatatatgtatctttccccttttcattacccatgttactttattaa |
100 |
Q |
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| T |
28900491 |
taatttcaagtgtcataaatccttagagtgcattgcatttagcacttttgatttcatatatgtatctttccccttttcattacccatgttactgtattaa |
28900392 |
T |
|
| Q |
101 |
tatgaaaggtgagatatatcaatatcttatccatttccatgtgtgtttcatatcttgaacagagccgaggaactagaaacagctctaatggaaaaggtga |
200 |
Q |
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| T |
28900391 |
tatgaaaggtgagatatatcaatatcttatccatttccatgtgtgtttcatatcttgaacagagccgaggaactagaaacagctctaatggaaaaggtga |
28900292 |
T |
|
| Q |
201 |
aggaagataatcgtctgcagttgagtgcaagggtatgtgcaacatttgaaaattgtatcttgctgttttaattatctatttgttggtatttgtgtttctt |
300 |
Q |
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| T |
28900291 |
aggaagataatcgtctgcagttgagtgcaagggtatgtgcaacatttgaaaattgtatcttgctgttttaattatctatttgttggtatttgtgtttctt |
28900192 |
T |
|
| Q |
301 |
agaatatggactaggcctgactcaattccaaaagctagctcaagaggtgaggattgttcaaagcttataaggaactattttagccatgtttcttgtcgaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28900191 |
agaatatggactaggcctgactcaattccaaaagctagctcaagaggtgaggattgttcaaagcttataaggaactattttagccatgtttcttgtcgaa |
28900092 |
T |
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| Q |
401 |
gtaggatctcaacatgcccctttg |
424 |
Q |
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| T |
28900091 |
gtaggatctcaacatgcccctttg |
28900068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 34782303 - 34782345
Alignment:
| Q |
313 |
aggcctgactcaattccaaaagctagctcaagaggtgaggatt |
355 |
Q |
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| T |
34782303 |
aggcctaactcaattccaaaagttagctcatgaggtgaggatt |
34782345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 361
Target Start/End: Complemental strand, 9207450 - 9207417
Alignment:
| Q |
328 |
ccaaaagctagctcaagaggtgaggattgttcaa |
361 |
Q |
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| T |
9207450 |
ccaaaagctagctcaaggggtgaggattgttcaa |
9207417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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