View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9802_high_4 (Length: 415)

Name: NF9802_high_4
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9802_high_4
NF9802_high_4
[»] chr3 (3 HSPs)
chr3 (1-400)||(33821231-33821630)
chr3 (12-400)||(33828459-33828847)
chr3 (97-252)||(33811371-33811526)
[»] chr5 (8 HSPs)
chr5 (113-222)||(26721942-26722051)
chr5 (113-222)||(26991691-26991800)
chr5 (113-225)||(26996383-26996495)
chr5 (113-216)||(27002667-27002770)
chr5 (263-346)||(27002516-27002599)
chr5 (263-346)||(26721797-26721880)
chr5 (263-346)||(26991546-26991629)
chr5 (263-346)||(26996241-26996324)
[»] chr2 (1 HSPs)
chr2 (146-237)||(1760837-1760928)


Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 33821630 - 33821231
Alignment:
Q  1 ctctccactataagccgaagctcattcaagagttgcttcattgggtccttggtagtacccatttccaaatgcgttcgtccctaccccatccaatatacta 100  Q
    ||||||| || ||||||||||   |||||||| |||||| ||||| ||||| ||||||||||||||||||| ||||||| | |||||| |||||| ||||    
T  33821630 ctctccagtacaagccgaagcggcttcaagaggtgcttctttggggccttgatagtacccatttccaaatgggttcgtcacgaccccagccaataaacta 33821531  T
Q  101 gccacgttaatcaccatgccgtcaaggcccacatcgttattgggtgcaactaacggtgggctttgaggcccataaataggttggtgaaagggccacgcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  33821530 gccacgttaatcaccatgccgtcaaggcccacatcgttattgggtgcaactaacggtgggctttgaggcccataaataggttggtgaaagggccatgcgc 33821431  T
Q  201 attgacctggacattgtgtctctgagttacccacccacacgtaagcaaatttatggtctactgaagaaccatgtgtcccacatctactggaacaaaaccc 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33821430 attggcctggacattgtgtctctgagttacccacccacacgtaagcaaatttatggtctactgaagaaccatgtgtcccacatctactggaacaaaaccc 33821331  T
Q  301 atcaactaccacgtcagccgaagtgagaacaacgttgatggcgtttgtctgtaagccattggatgctagctttatgatttgatcattggtgagtgatttt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  33821330 atcaactaccacgtcagccgaagtgagaacaacgttgatggcgtttgtctgtgagcccttggatgctagctttatgatttgatcattggtgagtgatttt 33821231  T

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Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 400
Target Start/End: Complemental strand, 33828847 - 33828459
Alignment:
Q  12 aagccgaagctcattcaagagttgcttcattgggtccttggtagtacccatttccaaatgcgttcgtccctaccccatccaatatactagccacgttaat 111  Q
    ||||||||||   |||||||| |||||| ||||| ||||| |||||||| |||||||||| |||||||    ||||| |||| | |||||||||||||||    
T  33828847 aagccgaagcagcttcaagaggtgcttctttggggccttgatagtacccgtttccaaatgggttcgtcaaggccccagccaacaaactagccacgttaat 33828748  T
Q  112 caccatgccgtcaaggcccacatcgttattgggtgcaactaacggtgggctttgaggcccataaataggttggtgaaagggccacgcacattgacctgga 211  Q
     ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33828747 taccatgccgtcaaggcccacatcgttatttggtgcaactaacggtggactttgaggcccataaataggttggtgaaagggccacgcacattgacctgga 33828648  T
Q  212 cattgtgtctctgagttacccacccacacgtaagcaaatttatggtctactgaagaaccatgtgtcccacatctactggaacaaaacccatcaactacca 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| ||| |||||||||||||||||||    
T  33828647 cattgtgtctctgagttacccacccacacgtaagcaaatttatggtttactgaagaaccgtgtttcccacatctaccggagcaaaacccatcaactacca 33828548  T
Q  312 cgtcagccgaagtgagaacaacgttgatggcgtttgtctgtaagccattggatgctagctttatgatttgatcattggtgagtgatttt 400  Q
    ||||||||||||||||||| || |||||||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||    
T  33828547 cgtcagccgaagtgagaaccacattgatggcgtttgtttgtgatcccttggatgctagctttatgatttgatcattggtgagtgatttt 33828459  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 97 - 252
Target Start/End: Complemental strand, 33811526 - 33811371
Alignment:
Q  97 actagccacgttaatcaccatgccgtcaaggcccacatcgttattgggtgcaactaacggtgggctttgaggcccataaataggttggtgaaagggccac 196  Q
    |||||||| ||| |||||||| || ||||| || |||||||| || |||||||| || |||| |||||| || || ||||| ||||||||||| |||||     
T  33811526 actagccaagtttatcaccattccatcaagccctacatcgttgtttggtgcaaccaatggtgcgctttgtggaccgtaaattggttggtgaaatggccaa 33811427  T
Q  197 gcacattgacctggacattgtgtctctgagttacccacccacacgtaagcaaattt 252  Q
    |||||| | |||||||| ||||| |||||||| || ||||| | ||||||||||||    
T  33811426 gcacatagccctggacactgtgtttctgagtttccaacccaaatgtaagcaaattt 33811371  T

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Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 26722051 - 26721942
Alignment:
Q  113 accatgccgtcaaggcccacatcgttattgggtgcaactaacggtgggctttgaggcccataaataggttggtgaaagggccacgcacattgacctggac 212  Q
    ||||| |||||||| |||||||||||||| |||||||| |||||||  ||||| || |||||||| ||||||||||| |||||||| |||||||| | ||    
T  26722051 accattccgtcaagacccacatcgttatttggtgcaaccaacggtgcactttgtggaccataaattggttggtgaaatggccacgcgcattgaccagcac 26721952  T
Q  213 attgtgtctc 222  Q
    ||||||||||    
T  26721951 attgtgtctc 26721942  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 26991800 - 26991691
Alignment:
Q  113 accatgccgtcaaggcccacatcgttattgggtgcaactaacggtgggctttgaggcccataaataggttggtgaaagggccacgcacattgacctggac 212  Q
    ||||| |||||||| |||||||||||||| |||||||| |||||||  ||||| || |||||||| ||||||||||| |||||||| |||||||| | ||    
T  26991800 accattccgtcaagacccacatcgttatttggtgcaaccaacggtgcactttgtggaccataaattggttggtgaaatggccacgcgcattgaccagcac 26991701  T
Q  213 attgtgtctc 222  Q
    ||||||||||    
T  26991700 attgtgtctc 26991691  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 26996495 - 26996383
Alignment:
Q  113 accatgccgtcaaggcccacatcgttattgggtgcaactaacggtgggctttgaggcccataaataggttggtgaaagggccacgcacattgacctggac 212  Q
    ||||| |||||||| |||||||||||||| |||||||| ||||| |  ||||| || |||||||| ||||| ||||| |||||||| |||||||| | ||    
T  26996495 accattccgtcaagacccacatcgttatttggtgcaaccaacggagcactttgtggaccataaattggttgatgaaatggccacgcgcattgaccagcac 26996396  T
Q  213 attgtgtctctga 225  Q
    |||||||||||||    
T  26996395 attgtgtctctga 26996383  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 27002770 - 27002667
Alignment:
Q  113 accatgccgtcaaggcccacatcgttattgggtgcaactaacggtgggctttgaggcccataaataggttggtgaaagggccacgcacattgacctggac 212  Q
    ||||| || ||||| || ||||||||||| |||||||| |||||||  ||||| || |||||||| ||||||||||| |||||||| |||||||| | ||    
T  27002770 accattccatcaagaccgacatcgttatttggtgcaaccaacggtgcactttgtggaccataaattggttggtgaaatggccacgcgcattgaccagcac 27002671  T
Q  213 attg 216  Q
    ||||    
T  27002670 attg 27002667  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 346
Target Start/End: Complemental strand, 27002599 - 27002516
Alignment:
Q  263 gaagaaccatgtgtcccacatctactggaacaaaacccatcaactaccacgtcagccgaagtgagaacaacgttgatggcgttt 346  Q
    |||||||||||||| ||||| ||||| |||||||| || ||||||| ||| ||||| |  || || ||||||||||||||||||    
T  27002599 gaagaaccatgtgttccacacctacttgaacaaaaaccgtcaactaacacatcagcggctgttaggacaacgttgatggcgttt 27002516  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 346
Target Start/End: Complemental strand, 26721880 - 26721797
Alignment:
Q  263 gaagaaccatgtgtcccacatctactggaacaaaacccatcaactaccacgtcagccgaagtgagaacaacgttgatggcgttt 346  Q
    ||||||||||| || ||||| ||||| |||||||| || ||||||| ||| ||||| |  || || ||||||||||||||||||    
T  26721880 gaagaaccatgggttccacacctacttgaacaaaaaccgtcaactaacacatcagcagctgttaggacaacgttgatggcgttt 26721797  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 346
Target Start/End: Complemental strand, 26991629 - 26991546
Alignment:
Q  263 gaagaaccatgtgtcccacatctactggaacaaaacccatcaactaccacgtcagccgaagtgagaacaacgttgatggcgttt 346  Q
    ||||||||||| || ||||| ||||| |||||||| || ||||||| ||| ||||| |  || || ||||||||||||||||||    
T  26991629 gaagaaccatgggttccacacctacttgaacaaaaaccgtcaactaacacatcagcagctgttaggacaacgttgatggcgttt 26991546  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 346
Target Start/End: Complemental strand, 26996324 - 26996241
Alignment:
Q  263 gaagaaccatgtgtcccacatctactggaacaaaacccatcaactaccacgtcagccgaagtgagaacaacgttgatggcgttt 346  Q
    ||||||||||| || ||||| ||||| |||||||| || ||||||| ||| ||||| |  || || ||||||||||||||||||    
T  26996324 gaagaaccatgggttccacacctacttgaacaaaaaccgtcaactaacacatcagcggctgttaggacaacgttgatggcgttt 26996241  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 1760928 - 1760837
Alignment:
Q  146 gcaactaacggtgggctttgaggcccataaataggttggtgaaagggccacgcacattgacctggacattgtgtctctgagttacccaccca 237  Q
    ||||||||||||||  |||| ||||| ||||| ||||||||||| ||||| || |||||||| |||||||| ||||| ||||| || |||||    
T  1760928 gcaactaacggtggtgtttggggcccgtaaattggttggtgaaatggccatgcgcattgaccaggacattgggtctcagagtttccaaccca 1760837  T

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