View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9802_high_9 (Length: 323)
Name: NF9802_high_9
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 47075867 - 47075563
Alignment:
| Q |
1 |
ttgattgcagtgaagagactagagaaggtggtggaagatggggaaagggaatttcaagcagaagtgagatccattgggaaaacccaccacaggaacctag |
100 |
Q |
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| T |
47075867 |
ttgattgcagtgaagagactagagaaggtggtggaagatggggaaagggaatttcaagcagaagtgagatccattgggaaaacccaccacaggaacctag |
47075768 |
T |
|
| Q |
101 |
ttagattgctgggtttttgtcatgagggttcaaaaaggcttttggtttatgaatacatgagcaacggatcacttgaaaagcttctgtttggtgatcaaag |
200 |
Q |
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| T |
47075767 |
ttagattgctgggtttttgtcatgagggttcaaaaaggcttttggtttatgaatacatgagcaacggatcacttgaaaagcttctgtttggtgatcaaag |
47075668 |
T |
|
| Q |
201 |
acgtccagattgggatgagagagtaagaatggcactggacattgctagagggatctcgtatctccatgaagaatgtgaggcaccaatcattcattgtgac |
300 |
Q |
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| T |
47075667 |
acgtccagattgggatgagagagtaagaatggcactggacattgctagagggatctcgtatctccatgaagaatgtgaggcaccaatcattcattgtgac |
47075568 |
T |
|
| Q |
301 |
ataaa |
305 |
Q |
| |
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||||| |
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| T |
47075567 |
ataaa |
47075563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 47068463 - 47068767
Alignment:
| Q |
1 |
ttgattgcagtgaagagactagagaaggtggtggaagatggggaaagggaatttcaagcagaagtgagatccattgggaaaacccaccacaggaacctag |
100 |
Q |
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||||||||||||||||||||||| || ||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47068463 |
ttgattgcagtgaagagactagaaaaagtggtggaagaaggtgaaaaggaatttcaagcagaagtgagatccattgggaaaacccaccacaggaacctag |
47068562 |
T |
|
| Q |
101 |
ttagattgctgggtttttgtcatgagggttcaaaaaggcttttggtttatgaatacatgagcaacggatcacttgaaaagcttctgtttggtgatcaaag |
200 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
47068563 |
ttagattgcttggtttttgtgttgagggttcaaaaaggcttctggtttatgaatacatgagcaacggatcacttggaaagcttctttttggtgatcaaag |
47068662 |
T |
|
| Q |
201 |
acgtccagattgggatgagagagtaagaatggcactggacattgctagagggatctcgtatctccatgaagaatgtgaggcaccaatcattcattgtgac |
300 |
Q |
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||| ||||||||| |||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| ||||| || |||||||||||||| ||| |
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| T |
47068663 |
acgcccagattggaatgagagagtaagaatagcactggatattgctagagggatcttgtatctccatgaagagtgtgatgctccaatcattcattgcgac |
47068762 |
T |
|
| Q |
301 |
ataaa |
305 |
Q |
| |
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|||| |
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| T |
47068763 |
ttaaa |
47068767 |
T |
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