View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9802_low_10 (Length: 338)
Name: NF9802_low_10
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 38 - 317
Target Start/End: Complemental strand, 33599817 - 33599538
Alignment:
| Q |
38 |
agagatgtggtcattcaaatttaaataatcatagtcaattattttataaacagtaaacacgtcacgacctgtatcatgaagtcaatggggagggcctgtt |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33599817 |
agagatgtggtcattcaaatttaaataatcatagtcatttattttataaacagtaaacacgtcacgacctgtatcatgaagtcaatggggagggcctgtt |
33599718 |
T |
|
| Q |
138 |
tttgggggatggtttggacagcaggagcacttgttttaagtctctgttaggtgcnnnnnnnggctagtttttatgtctctattaggtgtgttttggcata |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33599717 |
tttgggggatggtttggacagcaggagcacttgttttaagtctctgttaggtgctttttttggctagtttttatgtctctattaggtgtgttttggcata |
33599618 |
T |
|
| Q |
238 |
acacaggtgtggctaatgttggttgagattttcatgagcaacattccaaaacatgatgatctcaatagctttctgagcta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33599617 |
acacaggtgtggctaatgttggttgagattttcatgagtaacattccaaaacatgatgatctcaatagctttctgagcta |
33599538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 44063008 - 44063061
Alignment:
| Q |
264 |
gattttcatgagcaacattccaaaacatgatgatctcaatagctttctgagcta |
317 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | | |||||||||| ||||| |
|
|
| T |
44063008 |
gattttcatgagcaacattccagaacatgatgaacccgatagctttcttagcta |
44063061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University