View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9802_low_11 (Length: 329)
Name: NF9802_low_11
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_low_11 |
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| [»] chr1 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 46921306 - 46920994
Alignment:
| Q |
17 |
gcaccatgaaacaacattcttcctattaccaattctactaaaaaccatttcagcagatacaatgtccccacattttccatagaaatcaataagcccattc |
116 |
Q |
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| T |
46921306 |
gcaccatgaaacaacattcttcctattaccaattctactaaaaaccatttcagcagatacaatgtccccacattttccatagaaatcaataagcccattc |
46921207 |
T |
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| Q |
117 |
gcaacagaaacatcctctttatatccacaccgaacaataaaagcatgtaactgacgcccgagattcaatctcatcatatcaacgcaagcattcaaaaacg |
216 |
Q |
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| T |
46921206 |
gcaacagaaacatcctctttatatccacaccgaacaataaaagcatgtaactgacgcccgagattcaatctcatcatatcaacgcaagcattcaaaaacg |
46921107 |
T |
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| Q |
217 |
cacaaaatgtaatcgaattcggctctccatgcacacaaaggaactccttaaacgccgcaattgcatccaaagaccttcgatcttgaactgcattagaaat |
316 |
Q |
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| T |
46921106 |
cacaaaatgtaatcgaattcggctctccatgcacacaaaggaactccttaaacgccgcaatcacatccaaagaccttcgatcttgaactgcattagaaat |
46921007 |
T |
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| Q |
317 |
ataagtattccaa |
329 |
Q |
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| T |
46921006 |
ataagcattccaa |
46920994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 46891425 - 46891584
Alignment:
| Q |
64 |
tttcagcagatacaatgtccccacattttccatagaaatcaataagcccattcgcaacagaaacatcctctttatatccacaccgaacaataaaagcatg |
163 |
Q |
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| T |
46891425 |
tttcagcagatacaatgtccccacatttcccacaaaaactaataagcccattcgcaacagaaacatcctctttatatccaaaatgaattataaatgaatg |
46891524 |
T |
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| Q |
164 |
taactgacgcccgagattcaatctcatcatatcaacgcaagcattcaaaaacgcacaaaa |
223 |
Q |
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| T |
46891525 |
taaccgtcacccgtgattcaatctcaacaagtcaacacaggcattcaggaccgcacaaaa |
46891584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 329
Target Start/End: Original strand, 46891634 - 46891732
Alignment:
| Q |
231 |
gaattcggctctccatgcacacaaaggaactccttaaacgccgcaattgcatccaaagaccttcgatcttgaactgcattagaaatataagtattccaa |
329 |
Q |
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| T |
46891634 |
gaatttggctctccatgcacacatagaaactccttaaacacttcaattgcatccatagtacgccaatcttgaactgcaatggaaatataagcattccaa |
46891732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 38311463 - 38311151
Alignment:
| Q |
17 |
gcaccatgaaacaacattcttcctattaccaattctactaaaaaccatttcagcagatacaatgtccccacattttccatagaaatcaataagcccattc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38311463 |
gcaccatgaaacaacattcttcctattaccaattctattaaaaaccatttcagcagatacaatgtccccacattttccatagaaatcaataagcccattc |
38311364 |
T |
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| Q |
117 |
gcaacagaaacatcctctttatatccacaccgaacaataaaagcatgtaactgacgcccgagattcaatctcatcatatcaacgcaagcattcaaaaacg |
216 |
Q |
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| T |
38311363 |
gcaacagaaacatcctctttatatccacaccgaacaataaaagcatgtaactgacgcccgagattcaatctcaccatatcaacgcaagcattcaaaaatg |
38311264 |
T |
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| Q |
217 |
cacaaaatgtaatcgaattcggctctccatgcacacaaaggaactccttaaacgccgcaattgcatccaaagaccttcgatcttgaactgcattagaaat |
316 |
Q |
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| T |
38311263 |
cacaaaatgtaatcgaattcggctctccatgcacacaaagaaactccttaaacgccacaatcgcatccaaagaccttcgatcttgaactgcattagaaat |
38311164 |
T |
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| Q |
317 |
ataagtattccaa |
329 |
Q |
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||||| ||||||| |
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| T |
38311163 |
ataagcattccaa |
38311151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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