View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9802_low_17 (Length: 284)
Name: NF9802_low_17
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_low_17 |
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| [»] scaffold0455 (1 HSPs) |
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| [»] scaffold0175 (1 HSPs) |
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| [»] scaffold0154 (1 HSPs) |
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Alignment Details
Target: scaffold0455 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 12446 - 12182
Alignment:
| Q |
7 |
ttggtggtgtggaaaataaatccagtgttgagagaacatgttaagtaggtgttcttcatttaattaaatggtggaaaaattttatactttcccatgtgaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12446 |
ttggtggtgtggaaaataaatccagtgttgagagaacatgttaagtaggtgttcttcatttaatcaaatggtggaaaaattttatactttcccatgtgaa |
12347 |
T |
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| Q |
107 |
atgccaccccaaaagtgggttacattatttttattgataagaccggtgagtttttgcacatgtttattaaatacaataacctttgattttcttgaatttt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12346 |
atgccaccccaaaagtgggttacattatttttattgataagaccggtgagtttttgcacatgtttattaaatacaataaactttgattttcttgaatttt |
12247 |
T |
|
| Q |
207 |
acacgcacacaagggtttatgcacaagtgtattctgaccagacttcttgttctctatagtatatg |
271 |
Q |
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| T |
12246 |
acacgcacacaagggtttatgcacaagtgtattctgaccagacttcttgttctctatagtatatg |
12182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 28134410 - 28134146
Alignment:
| Q |
7 |
ttggtggtgtggaaaataaatccagtgttgagagaacatgttaagtaggtgttcttcatttaattaaatggtggaaaaattttatactttcccatgtgaa |
106 |
Q |
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| T |
28134410 |
ttggtggtgtggaaaataaatccagtgttgagagaacatgttaagtaggtgttcttcatttaatcaaatggtggaaaaattttatactttcccatgtgaa |
28134311 |
T |
|
| Q |
107 |
atgccaccccaaaagtgggttacattatttttattgataagaccggtgagtttttgcacatgtttattaaatacaataacctttgattttcttgaatttt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28134310 |
atgccaccccaaaagtgggttacattatttttattgataagaccggtgagtttttgcacatgtttattaaatacaataaactttgattttcttgaatttt |
28134211 |
T |
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| Q |
207 |
acacgcacacaagggtttatgcacaagtgtattctgaccagacttcttgttctctatagtatatg |
271 |
Q |
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| T |
28134210 |
acacgcacacaagggtttatgcacaagtgtattctgaccagacttcttgttctctatagtatatg |
28134146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 18246217 - 18246177
Alignment:
| Q |
74 |
atggtggaaaaattttatactttcccatgtgaaatgccacc |
114 |
Q |
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||||||| ||| |||||||| |||||||||||||||||||| |
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| T |
18246217 |
atggtgggaaagttttataccttcccatgtgaaatgccacc |
18246177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 32079799 - 32079839
Alignment:
| Q |
74 |
atggtggaaaaattttatactttcccatgtgaaatgccacc |
114 |
Q |
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| T |
32079799 |
atggtgggaaagttttagactttcccatgtgaaatgccacc |
32079839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 6381575 - 6381615
Alignment:
| Q |
74 |
atggtggaaaaattttatactttcccatgtgaaatgccacc |
114 |
Q |
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||||||||||| |||||| |||||||||||||||||||||| |
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| T |
6381575 |
atggtggaaaagttttatcctttcccatgtgaaatgccacc |
6381615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 37375443 - 37375489
Alignment:
| Q |
24 |
aaatccagtgttgagagaacatgttaagtaggtgttcttcatttaat |
70 |
Q |
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||||| |||||||||||||||||||||| || ||||||||| ||||| |
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| T |
37375443 |
aaatctagtgttgagagaacatgttaagaagatgttcttcacttaat |
37375489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 38575132 - 38575086
Alignment:
| Q |
24 |
aaatccagtgttgagagaacatgttaagtaggtgttcttcatttaat |
70 |
Q |
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||||| |||||||||||||||||||||| | ||||||||||||||| |
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| T |
38575132 |
aaatctagtgttgagagaacatgttaagaatatgttcttcatttaat |
38575086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 46187188 - 46187148
Alignment:
| Q |
74 |
atggtggaaaaattttatactttcccatgtgaaatgccacc |
114 |
Q |
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| T |
46187188 |
atggtgggaaagttttacactttcccatgtgaaatgccacc |
46187148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 26303 - 26262
Alignment:
| Q |
74 |
atggtggaaaaattttatactttcccatgtgaaatgccaccc |
115 |
Q |
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||||||||||| ||||| |||||||||||| ||||||||||| |
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| T |
26303 |
atggtggaaaagttttacactttcccatgttaaatgccaccc |
26262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 27423 - 27383
Alignment:
| Q |
74 |
atggtggaaaaattttatactttcccatgtgaaatgccacc |
114 |
Q |
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|||||||||||| ||||||| ||||||||| |||||||||| |
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| T |
27423 |
atggtggaaaaactttataccttcccatgtaaaatgccacc |
27383 |
T |
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