View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9802_low_19 (Length: 274)
Name: NF9802_low_19
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_low_19 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 4 - 274
Target Start/End: Complemental strand, 33821836 - 33821566
Alignment:
| Q |
4 |
cacgaggcatgattttgatgcaccgtagagaggattcgagttccatgtttttgttatactagagtagaacaaaccgaggttgtcgggtcaaagagtgcgg |
103 |
Q |
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| T |
33821836 |
cacgaggtatgattttgatgcaccgtgaagaggatttgagttcaatgtttttgttatactagagtagaacaaaccgaggttgtcgggtcaaagagtgcgg |
33821737 |
T |
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| Q |
104 |
gcaacaaatatttccttccattgacaccattagcgttataactcgccccacttgttggatccaccaagaggttcccagcgtagccagggtaagccccttt |
203 |
Q |
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| T |
33821736 |
gcaacaaatatttccttccattgacaccattagcgttataactcgcaccacttgttggatccaccaagaggttcccagcgtagccagggtaagccccttt |
33821637 |
T |
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| Q |
204 |
accgaactctccagtacaagccgaagcggcttcaagaggtgcttctttggggccttgatagtacccatttc |
274 |
Q |
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| T |
33821636 |
accgaactctccagtacaagccgaagcggcttcaagaggtgcttctttggggccttgatagtacccatttc |
33821566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 40 - 274
Target Start/End: Complemental strand, 33829028 - 33828794
Alignment:
| Q |
40 |
cgagttccatgtttttgttatactagagtagaacaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgacaccattagcgt |
139 |
Q |
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| T |
33829028 |
cgagtaccatgtttttgttatactagagtagaacaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgatgccattagcgt |
33828929 |
T |
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| Q |
140 |
tataactcgccccacttgttggatccaccaagaggttcccagcgtagccagggtaagcccctttaccgaactctccagtacaagccgaagcggcttcaag |
239 |
Q |
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| T |
33828928 |
tataacttgcaccacttgttggatccaccaaaaggttcccagcgtagccagggtaagctcctttaccatacactccagtgcaagccgaagcagcttcaag |
33828829 |
T |
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| Q |
240 |
aggtgcttctttggggccttgatagtacccatttc |
274 |
Q |
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| T |
33828828 |
aggtgcttctttggggccttgatagtacccgtttc |
33828794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 272
Target Start/End: Complemental strand, 27003025 - 27002820
Alignment:
| Q |
67 |
gtagaacaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgacaccattagcgttataactcgccccacttgttggatcca |
166 |
Q |
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| T |
27003025 |
gtagaacaaaccgaggttttagggtcaacaatagcaggcaacaaatacttccttccattatcaccattagcattgtagctagcaccacttgttttatcca |
27002926 |
T |
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| Q |
167 |
ccaagaggttcccagcgtagccagggtaagcccctttaccgaactctccagtacaagccgaagcggcttcaagaggtgcttctttggggccttgatagta |
266 |
Q |
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| T |
27002925 |
ccaaaaggtccccagcataaccaggataagctcctttagcataaacaccggtgcaagccgaagcagcttccaaaggagcttcttttggtccttgaaagta |
27002826 |
T |
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| Q |
267 |
cccatt |
272 |
Q |
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| T |
27002825 |
accatt |
27002820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 261
Target Start/End: Complemental strand, 26996714 - 26996556
Alignment:
| Q |
103 |
ggcaacaaatatttccttccattgacaccattagcgttataactcgccccacttgttggatccaccaagaggttcccagcgtagccagggtaagcccctt |
202 |
Q |
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| T |
26996714 |
ggcaacaaatacttccttccattatcaccattagcgttgtagctagcaccacttgttttgtccaccaaaaggtccccagcataaccaggataagctcctt |
26996615 |
T |
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| Q |
203 |
taccgaactctccagtacaagccgaagcggcttcaagaggtgcttctttggggccttga |
261 |
Q |
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| T |
26996614 |
tagcataaacaccggtgcaagccgaagcagcttccaaaggagcttcttttggtccttga |
26996556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 261
Target Start/End: Complemental strand, 26722306 - 26722112
Alignment:
| Q |
67 |
gtagaacaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgacaccattagcgttataactcgccccacttgttggatcca |
166 |
Q |
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| T |
26722306 |
gtagaacaagccgaggttttagggtcaacaatagcaggcaacaaatacttccttccattatcaccatttgcattatagctagcaccacttgttttgtcca |
26722207 |
T |
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| Q |
167 |
ccaagaggttcccagcgtagccagggtaagcccctttaccgaactctccagtacaagccgaagcggcttcaagaggtgcttctttggggccttga |
261 |
Q |
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| T |
26722206 |
gcaaaaggtccccagcataaccaggataagctcctttagcataaacaccggtgcaagccgaagcagcttccaaaggagcttctttaggtccttga |
26722112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 261
Target Start/End: Complemental strand, 26992055 - 26991861
Alignment:
| Q |
67 |
gtagaacaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgacaccattagcgttataactcgccccacttgttggatcca |
166 |
Q |
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| T |
26992055 |
gtagaacaagccgaggttttagggtcaacaatagcaggcaacaaatacttccttccattatcaccatttgcattatagctagcaccacttgttttgtcca |
26991956 |
T |
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| Q |
167 |
ccaagaggttcccagcgtagccagggtaagcccctttaccgaactctccagtacaagccgaagcggcttcaagaggtgcttctttggggccttga |
261 |
Q |
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||| |||| |||||| || ||||| ||||| |||||| | | | || || ||||||||||| ||||| | ||| |||||||| || |||||| |
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| T |
26991955 |
gcaaaaggtccccagcataaccaggataagctcctttagcataaacaccggtgcaagccgaagcagcttccaaaggagcttctttaggtccttga |
26991861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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