View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9802_low_2 (Length: 488)
Name: NF9802_low_2
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 3 - 472
Target Start/End: Original strand, 20199671 - 20200152
Alignment:
| Q |
3 |
taaactatatgcagagaatgagtgaatgagaatgagaaaacacacctcaaccataggactattttttggaatattgcaagccataattatattgagacca |
102 |
Q |
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| T |
20199671 |
taaactatatgcagaaaatgagtgaatgagagtgagagaacacacctcaaccataggactattttttggaatattgcaagccataattatattgagacca |
20199770 |
T |
|
| Q |
103 |
gtcttcaacactgcgaaaaacaaacaaagaatcttaaaccatgacccaaagtaataatttttcaaaacaactaacaacgtaacaaagttacctaatcgac |
202 |
Q |
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| T |
20199771 |
gtcttcaacactacgaaaaacaaacaaagaatcttaaaccatgacccaaagtaataatttttcaaaacacctaacaacgtaacaaagttacctaatcgac |
20199870 |
T |
|
| Q |
203 |
gagcaatgccagaacctgtattatcagaattcccaccaagtatagaagttacagaaaccacattattctgcaagttttaacacaaatcaaatcaataacc |
302 |
Q |
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| T |
20199871 |
gagcaatgccagaacctgtattatcagaattcccaccaagtatagaagttacagaaaccacattattctgcaagttttaacacaaatcaaatcaataacc |
20199970 |
T |
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| Q |
303 |
atctatgtaattacacttctgattgaagcgtgtccg------------gtgtcaacgtgtcagtgtcgttggtacttcatatataaccatacataatctt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20199971 |
atctatgtaattacacttctgattgaagcgtgtccggtgtccgtgtcagtgtcaacgtgtcagtgttgttggtacttcatatataaccatacataatctt |
20200070 |
T |
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| Q |
391 |
caatcatattaatcaattacaaactagctcaaaaagaatatgaaaacttacaggacgagttgaagctgctgcataaagttgt |
472 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20200071 |
caatcatattaatcaatgaataactagctcaaaaagaatatgaaaacttacaggacgagttgaagctgctgcataaagttgt |
20200152 |
T |
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