View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9802_low_23 (Length: 252)
Name: NF9802_low_23
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38142741 - 38142981
Alignment:
| Q |
1 |
caagaaatattaccttaaagacattttcatcgtacttgccaggagagatctgaagaggtttataatctccatcgttgaaagccaatgttcttcctacatt |
100 |
Q |
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| T |
38142741 |
caagaaatattaccttgaagacattttcatcgtacttgccaggagagatctgaagaggtttataatctccatcgttgaaagccaatgttcttcccacatt |
38142840 |
T |
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| Q |
101 |
taaaccatgttgagaagcttgttgaaaattagacgtgaccttgacccttgtagatgggtcagatgccattgtcatcaaccagtaggaattgaatccattc |
200 |
Q |
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| T |
38142841 |
taaaccatgttgagaagcttgttgaaaattggacgtgaccttgacccttgtagatgggtcagatgccattgtcatcaaccagtaggaattgaatccattc |
38142940 |
T |
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| Q |
201 |
acatagtgtgtctttccattcagaacaaaatgagtaccttt |
241 |
Q |
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| T |
38142941 |
acatagtgtgtctttccattcagaataaaatgagtaccttt |
38142981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 38111768 - 38112000
Alignment:
| Q |
9 |
attaccttaaagacattttcatcgtacttgccaggagagatctgaagaggtttataatctccatcgttgaaagccaatgttcttcctacatttaaaccat |
108 |
Q |
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| T |
38111768 |
attaccctgaagacattttcatcgtacttgccaggagagatctgaagagctttataacctccatcgttgcaagcccatgttcttcctacatttaaaccat |
38111867 |
T |
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| Q |
109 |
gttgagaagcttgttgaaaattagacgtgaccttgacccttgtagatgggtcagatgccattgtcatcaaccagtaggaattgaatccattcacatagtg |
208 |
Q |
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| T |
38111868 |
gtcgagaagcttgttggaaatttgaagtgaccttagaacttgtagatgggtcagatgccatgatcattaaccaataggaattgaatccattcacatagtg |
38111967 |
T |
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| Q |
209 |
tgtctttccattcagaacaaaatgagtaccttt |
241 |
Q |
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| T |
38111968 |
tgtctttccattcagaataaaatgagtaccttt |
38112000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 38156055 - 38156255
Alignment:
| Q |
1 |
caagaaatattaccttaaagacattttcatcgtacttgccaggagagatctgaagaggtttataatctccatcgttgaaagccaatgttcttcctacatt |
100 |
Q |
| |
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||||||| |||||||| |||||||||||||| || |||||||| || |||||||||||| |||||||||||||||||||| |||||||||| ||||| |
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| T |
38156055 |
caagaaacattaccttgaagacattttcatcataagaaccaggagaaatttgaagaggtttagaatctccatcgttgaaagcccatgttcttcccacatt |
38156154 |
T |
|
| Q |
101 |
taaaccatgttgagaagcttgttgaaaattagacgtgaccttgacccttgtagatgggtcagatgccattgtcatcaaccagtaggaattgaatccattc |
200 |
Q |
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| T |
38156155 |
taaaccatgttgagaagcttgttgaaaattggacgtgaccttgacccttgtagatgggtcagatgccattgtcatcaaccagtaggaattgaatccattc |
38156254 |
T |
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| Q |
201 |
a |
201 |
Q |
| |
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| |
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| T |
38156255 |
a |
38156255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 38085948 - 38086180
Alignment:
| Q |
9 |
attaccttaaagacattttcatcgtacttgccaggagagatctgaagaggtttataatctccatcgttgaaagccaatgttcttcctacatttaaaccat |
108 |
Q |
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|||||||| || ||||||||||| || ||||||||||| ||||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
38085948 |
attaccttgaaaacattttcatcataagaaccaggagagatttgaagagctttataacctccatcattgaaagcccatgttcttcctacatttaaaccat |
38086047 |
T |
|
| Q |
109 |
gttgagaagcttgttgaaaattagacgtgaccttgacccttgtagatgggtcagatgccattgtcatcaaccagtaggaattgaatccattcacatagtg |
208 |
Q |
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| T |
38086048 |
gttgagaagcttgttgaaaagtggaagtgaccttagaacttgtagatggatcagatgccatggttgttaaccaataggaattgaatccattcacatagtg |
38086147 |
T |
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| Q |
209 |
tgtctttccattcagaacaaaatgagtaccttt |
241 |
Q |
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|||||| ||||| |||| |||||| || ||||| |
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| T |
38086148 |
tgtcttcccattgagaataaaatgtgttccttt |
38086180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 39 - 232
Target Start/End: Original strand, 38091558 - 38091751
Alignment:
| Q |
39 |
ccaggagagatctgaagaggtttataatctccatcgttgaaagccaatgttcttcctacatttaaaccatgttgagaagcttgttgaaaattagacgtga |
138 |
Q |
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| T |
38091558 |
ccaggagaaatttgaagggctttatagcctccatcattgaaagcccatgttcttcctacatttaaaccatgttgtgaagcttgttgaaatgcagatgtaa |
38091657 |
T |
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| Q |
139 |
ccttgacccttgtagatgggtcagatgccattgtcatcaaccagtaggaattgaatccattcacatagtgtgtctttccattcagaacaaaatg |
232 |
Q |
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| T |
38091658 |
ctttgggtcttgtagataggtcagctgccataatcatcaaccagtgggaattgaatccattcacatagtgtgtcttcccattcataagaaaatg |
38091751 |
T |
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