View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9802_low_24 (Length: 250)

Name: NF9802_low_24
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9802_low_24
NF9802_low_24
[»] chr3 (22 HSPs)
chr3 (43-240)||(48712892-48713089)
chr3 (1-45)||(996361-996405)
chr3 (1-44)||(12734116-12734159)
chr3 (1-48)||(19253710-19253757)
chr3 (1-44)||(20498097-20498140)
chr3 (1-43)||(3206472-3206514)
chr3 (1-43)||(22057651-22057693)
chr3 (1-51)||(33808078-33808128)
chr3 (1-44)||(16010750-16010793)
chr3 (5-48)||(51699759-51699802)
chr3 (1-47)||(10139422-10139468)
chr3 (1-39)||(29029898-29029936)
chr3 (1-43)||(33996767-33996809)
chr3 (1-45)||(6589449-6589493)
chr3 (1-45)||(29449136-29449180)
chr3 (1-48)||(15494007-15494054)
chr3 (1-44)||(40246731-40246774)
chr3 (7-49)||(25418248-25418290)
chr3 (1-39)||(48379050-48379088)
chr3 (1-45)||(35337620-35337665)
chr3 (1-42)||(37820753-37820794)
chr3 (7-43)||(52079881-52079917)
[»] chr1 (17 HSPs)
chr1 (1-48)||(6304530-6304577)
chr1 (1-44)||(22183251-22183294)
chr1 (1-48)||(28824648-28824695)
chr1 (1-47)||(953697-953743)
chr1 (1-44)||(730030-730073)
chr1 (1-44)||(19452126-19452169)
chr1 (1-44)||(21222029-21222072)
chr1 (5-48)||(28541381-28541424)
chr1 (5-44)||(45760290-45760329)
chr1 (1-40)||(47654630-47654669)
chr1 (1-43)||(35279554-35279596)
chr1 (1-43)||(49198543-49198585)
chr1 (1-45)||(49417964-49418008)
chr1 (1-44)||(33025393-33025436)
chr1 (1-44)||(50192827-50192870)
chr1 (1-42)||(35679404-35679445)
chr1 (1-37)||(48524208-48524244)
[»] chr5 (9 HSPs)
chr5 (1-55)||(7016972-7017026)
chr5 (1-44)||(21146955-21146998)
chr5 (1-44)||(43319134-43319177)
chr5 (1-42)||(27459224-27459265)
chr5 (1-41)||(16894134-16894174)
chr5 (1-40)||(5273237-5273276)
chr5 (5-50)||(33656322-33656368)
chr5 (5-42)||(6460682-6460719)
chr5 (1-45)||(32158174-32158218)
[»] chr4 (23 HSPs)
chr4 (1-50)||(22201896-22201945)
chr4 (1-48)||(42786650-42786697)
chr4 (4-50)||(30009956-30010002)
chr4 (1-45)||(25331017-25331061)
chr4 (5-49)||(41320632-41320676)
chr4 (1-42)||(24131248-24131289)
chr4 (1-45)||(40537421-40537465)
chr4 (5-44)||(1044697-1044736)
chr4 (1-44)||(41881360-41881403)
chr4 (4-42)||(28541587-28541625)
chr4 (1-42)||(7250049-7250090)
chr4 (1-38)||(44775949-44775986)
chr4 (1-41)||(46635919-46635959)
chr4 (160-219)||(25893708-25893767)
chr4 (5-40)||(31315008-31315043)
chr4 (1-44)||(37915672-37915715)
chr4 (1-41)||(1112784-1112822)
chr4 (5-42)||(37046732-37046769)
chr4 (1-42)||(49469210-49469251)
chr4 (1-49)||(25935779-25935827)
chr4 (1-49)||(28847145-28847193)
chr4 (1-33)||(32951112-32951144)
chr4 (1-45)||(39479633-39479677)
[»] chr6 (5 HSPs)
chr6 (1-49)||(2301013-2301061)
chr6 (1-42)||(1391513-1391554)
chr6 (1-44)||(6197753-6197796)
chr6 (1-44)||(29076484-29076527)
chr6 (1-44)||(29111457-29111500)
[»] chr8 (15 HSPs)
chr8 (1-44)||(24502046-24502089)
chr8 (1-43)||(24214866-24214908)
chr8 (1-45)||(23115443-23115487)
chr8 (1-44)||(42735552-42735595)
chr8 (1-47)||(7507174-7507220)
chr8 (5-58)||(8543393-8543446)
chr8 (5-44)||(2705098-2705137)
chr8 (1-44)||(26374703-26374746)
chr8 (1-40)||(41478989-41479028)
chr8 (5-47)||(5576900-5576942)
chr8 (1-51)||(29260319-29260369)
chr8 (1-42)||(42937250-42937291)
chr8 (1-44)||(26373692-26373736)
chr8 (1-40)||(43959549-43959588)
chr8 (1-43)||(32711557-32711599)
[»] chr7 (23 HSPs)
chr7 (1-48)||(8078280-8078327)
chr7 (1-50)||(31401579-31401628)
chr7 (1-45)||(44343671-44343715)
chr7 (1-44)||(30440685-30440728)
chr7 (1-42)||(43581365-43581406)
chr7 (1-41)||(32143195-32143235)
chr7 (5-45)||(34008903-34008943)
chr7 (1-45)||(34695119-34695163)
chr7 (1-48)||(18915010-18915057)
chr7 (1-40)||(20275538-20275577)
chr7 (7-45)||(40996931-40996969)
chr7 (5-42)||(973074-973111)
chr7 (2-42)||(47879059-47879099)
chr7 (2-42)||(47914157-47914197)
chr7 (1-40)||(727405-727444)
chr7 (1-51)||(7113335-7113388)
chr7 (5-44)||(12893297-12893336)
chr7 (1-39)||(7719536-7719574)
chr7 (5-39)||(43679363-43679397)
chr7 (1-46)||(9179763-9179808)
chr7 (1-42)||(31638766-31638807)
chr7 (1-42)||(39219610-39219651)
chr7 (1-45)||(7993023-7993067)
[»] chr2 (18 HSPs)
chr2 (1-52)||(9120049-9120100)
chr2 (1-46)||(31170902-31170947)
chr2 (1-45)||(26601478-26601522)
chr2 (1-48)||(305745-305792)
chr2 (1-48)||(22552041-22552088)
chr2 (1-44)||(24776244-24776287)
chr2 (1-43)||(16269581-16269623)
chr2 (1-43)||(20605042-20605084)
chr2 (1-45)||(12407268-12407312)
chr2 (1-41)||(14198854-14198894)
chr2 (1-41)||(44765667-44765707)
chr2 (1-44)||(378868-378911)
chr2 (5-44)||(1789331-1789370)
chr2 (3-38)||(5093317-5093352)
chr2 (1-48)||(35316947-35316994)
chr2 (1-43)||(14920624-14920666)
chr2 (1-49)||(28844439-28844487)
chr2 (179-223)||(41725924-41725968)
[»] scaffold0113 (1 HSPs)
scaffold0113 (1-50)||(39129-39178)
[»] scaffold0037 (1 HSPs)
scaffold0037 (1-45)||(100098-100142)
[»] scaffold0151 (1 HSPs)
scaffold0151 (5-42)||(38800-38837)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-42)||(102026-102067)
[»] scaffold0651 (1 HSPs)
scaffold0651 (5-40)||(8654-8689)
[»] scaffold0922 (1 HSPs)
scaffold0922 (1-48)||(4083-4131)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 48713089 - 48712892
Alignment:
Q  43 cctaaatttcgtaggctaattagtccatgatgagtttacattgacgcaggataacatacaatgtggcatgttcaattaacgcaccacgtcataatttcta 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48713089 cctaaatttcgtaggctaattagtccatgatgagtttacattgacgcaggataacatacaatgcggcatgttcaattaacgcaccacgtcataatttcta 48712990  T
Q  143 acatcaaattttgacggagggaccattttgaattacattttacaatttcatgaatgtatttgtcaattcacaaaaatcaaaaactttcttgacctatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  48712989 acatcaaattttgacggagggaccattttgaattacattttacaatttcatgaatgtatttgtcaattcacaaaaatcagaaacttttttgacctatg 48712892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 996361 - 996405
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  996361 aaagtcttttaaaatcccttagaatcatgatccaatacaccccct 996405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12734116 - 12734159
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  12734116 aaagtcttttaaaatcccttagaatcatgatccaatacaccccc 12734159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 19253757 - 19253710
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaa 48  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  19253757 aaagtcttttaaaatcccttagaatcatgatccaataaaccccctaaa 19253710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 20498140 - 20498097
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  20498140 aaagtcttttaaaatcccttagaatcatgatccaatacaccccc 20498097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3206472 - 3206514
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacccc 43  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  3206472 aaagtcttttaaaatcccttagaatcatgatccaatacacccc 3206514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22057693 - 22057651
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacccc 43  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  22057693 aaagtcttttaaaatcccttagaatcatgatccaatacacccc 22057651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33808078 - 33808128
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaattt 51  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||| ||||    
T  33808078 aaagtcttttaaaatcccttagaatcatgattcaatacaccccctacattt 33808128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 16010793 - 16010750
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||    
T  16010793 aaagtcttttaaaatcccttagaattatgatccaatacaccccc 16010750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 51699759 - 51699802
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacaccccctaaa 48  Q
    |||||||||||| |||| ||||||||||||||||||||||||||    
T  51699759 tcttttaaaatcttttataatcatgatccaatacaccccctaaa 51699802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10139422 - 10139468
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaa 47  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||||||    
T  10139422 aaagtattttaaaatcccttagaatcatgattcaatacaccccctaa 10139468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 29029936 - 29029898
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaataca 39  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  29029936 aaagtcttttaaaatcccttagaatcatgatccaataca 29029898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33996767 - 33996809
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacccc 43  Q
    ||||||||| ||||||| |||||||||||||||||||||||||    
T  33996767 aaagtctttcaaaatcccttagaatcatgatccaatacacccc 33996809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6589493 - 6589449
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    ||||||||||||| ||| ||||||||||||||||||||| |||||    
T  6589493 aaagtcttttaaagtcccttagaatcatgatccaatacatcccct 6589449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29449136 - 29449180
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||||    
T  29449136 aaagtcttttaaaatcccttataatcatgatctaatacaccccct 29449180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15494007 - 15494054
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaa 48  Q
    ||||||||||||||||| ||||||| || |||||||||| ||||||||    
T  15494007 aaagtcttttaaaatcccttagaattataatccaatacatcccctaaa 15494054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 40246774 - 40246731
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||| ||||||||||  ||||||||||||||||||||||||||    
T  40246774 aaagttttttaaaatctcttagaatcatgatccaatacaccccc 40246731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 25418290 - 25418248
Alignment:
Q  7 ttttaaaatcctttagaatcatgatccaatacaccccctaaat 49  Q
    ||||||||||  ||||||||||||||||||| |||||||||||    
T  25418290 ttttaaaatctcttagaatcatgatccaataaaccccctaaat 25418248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 48379088 - 48379050
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaataca 39  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  48379088 aaagtcttttaaaatcctatagaatcataatccaataca 48379050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35337665 - 35337620
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatga-tccaatacaccccct 45  Q
    ||||||||||||||||| |||||||||||| || ||||||||||||    
T  35337665 aaagtcttttaaaatcccttagaatcatgattcaaatacaccccct 35337620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37820753 - 37820794
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    ||||||||||||||||| |||||||||| |||||||| ||||    
T  37820753 aaagtcttttaaaatcccttagaatcattatccaatataccc 37820794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 52079917 - 52079881
Alignment:
Q  7 ttttaaaatcctttagaatcatgatccaatacacccc 43  Q
    ||||||||||  |||||||||||||||||||||||||    
T  52079917 ttttaaaatcacttagaatcatgatccaatacacccc 52079881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6304530 - 6304577
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaa 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6304530 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaa 6304577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 22183294 - 22183251
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  22183294 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 22183251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 28824648 - 28824695
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaa 48  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28824648 aaagtcttttaaaatcccttagaatcatgatccaatacaccccctaaa 28824695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 953743 - 953697
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaa 47  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  953743 aaagtcttttaaaatcccttagaatcatgatccaatacaccccctaa 953697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 730073 - 730030
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  730073 aaagtcttttaaaatcccttagaatcatgatccaatacaccccc 730030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 19452126 - 19452169
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  19452126 aaagtcttttaaaatcccttagaatcatgatccaatacaccccc 19452169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21222072 - 21222029
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    |||| |||||||||||| ||||||||||||||||||||||||||    
T  21222072 aaagccttttaaaatcccttagaatcatgatccaatacaccccc 21222029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 28541424 - 28541381
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacaccccctaaa 48  Q
    ||||||||||||  ||||||||||||||||||||||||||||||    
T  28541424 tcttttaaaatcgcttagaatcatgatccaatacaccccctaaa 28541381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 45760290 - 45760329
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  45760290 tcttttaaaatcccttagaatcatgatccaatacaccccc 45760329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 47654630 - 47654669
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacac 40  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  47654630 aaagtcttttaaaatcccttagaatcatgatccaatacac 47654669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 35279596 - 35279554
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacccc 43  Q
    ||||||||||||||||  |||||||||||||||||||||||||    
T  35279596 aaagtcttttaaaatctcttagaatcatgatccaatacacccc 35279554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 49198543 - 49198585
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacccc 43  Q
    ||||||||||||||| | |||||||||||||||||||||||||    
T  49198543 aaagtcttttaaaattccttagaatcatgatccaatacacccc 49198585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 49418008 - 49417964
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    ||||||||||||||||  ||||||||||||||||||| |||||||    
T  49418008 aaagtcttttaaaatctcttagaatcatgatccaatataccccct 49417964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 33025436 - 33025393
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||| ||  ||||||||||||||||||||||||||    
T  33025436 aaagtcttttaaattctcttagaatcatgatccaatacaccccc 33025393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 50192827 - 50192870
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||| | ||||||||||||| ||||||||||||    
T  50192827 aaagtcttttaaaattccttagaatcatgattcaatacaccccc 50192870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35679404 - 35679445
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||    
T  35679404 aaagtcttttaaaatcccttaaaatcatgattcaatacaccc 35679445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48524244 - 48524208
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaata 37  Q
    ||||||||||||||| | |||||||||||||||||||    
T  48524244 aaagtcttttaaaattccttagaatcatgatccaata 48524208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7016972 - 7017026
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaatttcgta 55  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  7016972 aaagtcttttaaaatcccttagaatcatgatccaatacaccccctaaattgcgta 7017026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21146998 - 21146955
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  21146998 aaagtcttttaaaatcccttagaatcatgatccaatacaccccc 21146955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 43319177 - 43319134
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  43319177 aaagtcttttaaaatcccttagaatcatgatccaatacaccccc 43319134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27459224 - 27459265
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  27459224 aaagttttttaaaatccgttagaatcatgatccaatacaccc 27459265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16894134 - 16894174
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacc 41  Q
    ||||||||||||||||| ||||||| |||||||||||||||    
T  16894134 aaagtcttttaaaatcccttagaattatgatccaatacacc 16894174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5273237 - 5273276
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacac 40  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  5273237 aaagtcttttaaaatcccttaaaatcatgatccaatacac 5273276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 33656322 - 33656368
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacaccc-cctaaatt 50  Q
    ||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  33656322 tcttttaaaatcccttaaaatcatgatccaatacaccctcctaaatt 33656368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 6460719 - 6460682
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  6460719 tcttttaaaatcccttagaatcatgattcaatacaccc 6460682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32158174 - 32158218
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    ||||||||||||||| | ||||||||||||| ||||| |||||||    
T  32158174 aaagtcttttaaaattccttagaatcatgattcaatataccccct 32158218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 22201945 - 22201896
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaatt 50  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22201945 aaagtcttttaaaatcccttagaatcatgatccaatacaccccctaaatt 22201896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42786697 - 42786650
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaa 48  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42786697 aaagtcttttaaaatcccttagaatcatgatccaatacaccccctaaa 42786650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 30009956 - 30010002
Alignment:
Q  4 gtcttttaaaatcctttagaatcatgatccaatacaccccctaaatt 50  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  30009956 gtcttttaaaatcccttagaatcatgatccaatacaccccctaaatt 30010002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25331061 - 25331017
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  25331061 aaagtcttttaaaatcttttagaatcatgatccaatacaccccct 25331017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 41320676 - 41320632
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacaccccctaaat 49  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  41320676 tcttttaaaatcttttagaatcatgatccaatacaccccctaaat 41320632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24131248 - 24131289
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  24131248 aaagtcttttaaaatcccttagaatcatgatccaatacaccc 24131289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40537421 - 40537465
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||    
T  40537421 aaagtcttttaaaatcccttacaatcatgatccaatacaccccct 40537465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 1044736 - 1044697
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  1044736 tcttttaaaatcccttagaatcatgatccaatacaccccc 1044697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 41881360 - 41881403
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||    
T  41881360 aaagtcttttaaaatcccttaaaatcatgatccaatacaccccc 41881403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 28541625 - 28541587
Alignment:
Q  4 gtcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  28541625 gtcttttaaaatcccttagaatcatgatccaatacaccc 28541587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7250049 - 7250090
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  7250049 aaagtcttttaaaattccttagaatcatgatccaatacaccc 7250090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44775949 - 44775986
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatac 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  44775949 aaagtcttttaaaatccattagaatcatgatccaatac 44775986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 46635919 - 46635959
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacc 41  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  46635919 aaagtcttttaaaatctcttagaatcatgatccaatacacc 46635959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 25893767 - 25893708
Alignment:
Q  160 agggaccattttgaattacattttacaatttcatgaatgtatttgtcaattcacaaaaat 219  Q
    |||||| ||||||||  |||||||||||||||||| |||||||| ||||||  |||||||    
T  25893767 agggactattttgaacaacattttacaatttcatggatgtatttatcaatttgcaaaaat 25893708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 31315008 - 31315043
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacac 40  Q
    ||||||||||||| ||||||||||||||||||||||    
T  31315008 tcttttaaaatcccttagaatcatgatccaatacac 31315043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37915715 - 37915672
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    |||||||||||||||||  ||||||||| |||||||||||||||    
T  37915715 aaagtcttttaaaatcccatagaatcataatccaatacaccccc 37915672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1112822 - 1112784
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacc 41  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  1112822 aaagtcttttaaaatc--ttagaatcatgatccaatacacc 1112784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 37046732 - 37046769
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  37046732 tcttttaaaattccttagaatcatgatccaatacaccc 37046769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 49469251 - 49469210
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    ||||||||||||||| | || |||||||||||||||||||||    
T  49469251 aaagtcttttaaaattccttggaatcatgatccaatacaccc 49469210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25935827 - 25935779
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaat 49  Q
    ||||||||||||||||||||  ||||   ||||||||||||||||||||    
T  25935827 aaagtcttttaaaatcctttgaaatctcaatccaatacaccccctaaat 25935779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28847145 - 28847193
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaat 49  Q
    ||||||||||||||||||||| ||||   |||||||||| |||||||||    
T  28847145 aaagtcttttaaaatcctttaaaatctcaatccaatacatcccctaaat 28847193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 32951112 - 32951144
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatcc 33  Q
    ||||||||||||||||| |||||||||||||||    
T  32951112 aaagtcttttaaaatcccttagaatcatgatcc 32951144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39479633 - 39479677
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    |||||||||||||||   ||| |||||||||||||||||||||||    
T  39479633 aaagtcttttaaaatttcttaaaatcatgatccaatacaccccct 39479677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2301013 - 2301061
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaat 49  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2301013 aaagtcttttaaaatcccttagaatcatgatccaatacaccccctaaat 2301061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1391554 - 1391513
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  1391554 aaagtcatttaaaatcctttagaatcatgatccaatacaccc 1391513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6197753 - 6197796
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||    
T  6197753 aaagttttttaaaatcccttagaatcatgatccaatacaccccc 6197796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 29076527 - 29076484
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||  ||||||||||||||||||||||||||    
T  29076527 aaagtcttttaaaatctcttagaatcatgatccaatacaccccc 29076484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 29111500 - 29111457
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||  ||||||||||||||||||||||||||    
T  29111500 aaagtcttttaaaatctcttagaatcatgatccaatacaccccc 29111457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24502046 - 24502089
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24502046 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 24502089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24214866 - 24214908
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacccc 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24214866 aaagtcttttaaaatcctttagaatcatgatccaatacacccc 24214908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23115443 - 23115487
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  23115443 aaagtcttttaaaatcccttagaatcatgatccaatacaccccct 23115487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42735552 - 42735595
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  42735552 aaagtcttttaaaatcccttagaatcatgatccaatacaccccc 42735595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7507174 - 7507220
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaa 47  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  7507174 aaagtcttttaaaatcccttagaatcatgatccaatacaccctctaa 7507220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 8543446 - 8543393
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacaccccctaaatttcgtaggc 58  Q
    ||||||||||||| |||||||||||||| |||||||||||| || |||||||||    
T  8543446 tcttttaaaatcccttagaatcatgatctaatacacccccttaagttcgtaggc 8543393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 2705098 - 2705137
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  2705098 tcttttaaaatcctttacaatcatgatccaatacaccccc 2705137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 26374703 - 26374746
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||    
T  26374703 aaagtcttttaaaatcccttagaatcatgatccaatacatcccc 26374746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 41479028 - 41478989
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacac 40  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  41479028 aaagtcttttaaaatcccttagaatcatgatccaatacac 41478989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 5576900 - 5576942
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacaccccctaa 47  Q
    ||||||||||||| |||||||||| ||||||||||||||||||    
T  5576900 tcttttaaaatcccttagaatcataatccaatacaccccctaa 5576942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29260319 - 29260369
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaattt 51  Q
    ||||||||||||||||||||| ||||   ||||||||||||||||||||||    
T  29260319 aaagtcttttaaaatcctttaaaatctcaatccaatacaccccctaaattt 29260369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42937291 - 42937250
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  42937291 aaagtcttttaaaatcccttaaaatcatgatccaatacaccc 42937250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 26373736 - 26373692
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgat-ccaatacaccccc 44  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||    
T  26373736 aaagtcttttaaaatcccttagaatcatgatcccaatacaccccc 26373692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43959588 - 43959549
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacac 40  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  43959588 aaagtcttttaaaatcctttaaaatcatgatcaaatacac 43959549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 32711557 - 32711599
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacccc 43  Q
    ||||||||||||| ||  |||||||||||||||||||||||||    
T  32711557 aaagtcttttaaagtctcttagaatcatgatccaatacacccc 32711599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8078327 - 8078280
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaa 48  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8078327 aaagtcttttaaaatcccttagaatcatgatccaatacaccccctaaa 8078280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31401628 - 31401579
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaatt 50  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  31401628 aaagtcttttaaagttctttagaatcatgatccaatacaccccctaaatt 31401579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44343671 - 44343715
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  44343671 aaagtcttttaaaatcccttagaatcatgatccaatacaccccct 44343715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30440728 - 30440685
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  30440728 aaagtcttttaaaatcccttagaatcatgatccaatacaccccc 30440685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43581365 - 43581406
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  43581365 aaagtcttttaaaattctttagaatcatgatccaatacaccc 43581406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32143195 - 32143235
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacc 41  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  32143195 aaagtcttttaaaatcccttagaatcatgatccaatacacc 32143235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 34008943 - 34008903
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  34008943 tcttttaaaatcccttagaatcatgatccaatacaccccct 34008903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34695163 - 34695119
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||    
T  34695163 aaagtcttttaaaatcccttagaatcatgattcaatacaccccct 34695119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18915010 - 18915057
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaa 48  Q
    ||||||||||||||||| |||||  |||||||||||||||||||||||    
T  18915010 aaagtcttttaaaatcccttagatacatgatccaatacaccccctaaa 18915057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 20275538 - 20275577
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacac 40  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  20275538 aaagtcttttaaaatcccttagaatcatgatccaatacac 20275577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 40996931 - 40996969
Alignment:
Q  7 ttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  40996931 ttttaaaatcccttagaatcatgatccaatacaccccct 40996969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 973111 - 973074
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  973111 tcttttaaaatcccttagaatcatgatccaatacaccc 973074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 47879099 - 47879059
Alignment:
Q  2 aagtcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  47879099 aagtcttttaaaatcccttagaatcatgattcaatacaccc 47879059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 47914197 - 47914157
Alignment:
Q  2 aagtcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  47914197 aagtcttttaaaatcccttagaatcatgattcaatacaccc 47914157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 727444 - 727405
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacac 40  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  727444 aaagtcatttaaaatccattagaatcatgatccaatacac 727405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7113388 - 7113335
Alignment:
Q  1 aaagtcttttaaaatcctttagaatca---tgatccaatacaccccctaaattt 51  Q
    ||||||||||||||||| |||||||||   |||||||||||||||||| |||||    
T  7113388 aaagtcttttaaaatcccttagaatcatgatgatccaatacacccccttaattt 7113335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 12893336 - 12893297
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  12893336 tcttttaaaataccttagaatcatgatccaatacaccccc 12893297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 7719536 - 7719574
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaataca 39  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  7719536 aaagtcttttaaaatcttttacaatcatgatccaataca 7719574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 43679397 - 43679363
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaataca 39  Q
    ||||||||||||| |||||||||||||||||||||    
T  43679397 tcttttaaaatcccttagaatcatgatccaataca 43679363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9179808 - 9179763
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacccccta 46  Q
    |||||||||||||||| ||||||||  | |||||||||||||||||    
T  9179808 aaagtcttttaaaatcttttagaatgctaatccaatacacccccta 9179763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31638807 - 31638766
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    ||||||||||||||||  ||||||||||||| ||||||||||    
T  31638807 aaagtcttttaaaatctcttagaatcatgattcaatacaccc 31638766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39219610 - 39219651
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    ||||||||||||||| | ||||||| ||||||||||||||||    
T  39219610 aaagtcttttaaaattccttagaattatgatccaatacaccc 39219651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7993067 - 7993023
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    |||||||||||||||||| ||||||| | |||||||||| |||||    
T  7993067 aaagtcttttaaaatcctatagaatcttaatccaatacatcccct 7993023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9120100 - 9120049
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaatttc 52  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  9120100 aaagtcttttaaaatcccttagaatcatgatccaatacacccccttaatttc 9120049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31170902 - 31170947
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacccccta 46  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  31170902 aaagtcttttaaaatcccttagaatcatgatccaatacacccccta 31170947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26601478 - 26601522
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  26601478 aaagtcttttaaaatcctttagaaacatgatccaatacaccccct 26601522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 305745 - 305792
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaa 48  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  305745 aaagtcttttaaaatcgcttagaatcatgatccaatacaccccctaaa 305792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22552041 - 22552088
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaa 48  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  22552041 aaagtcttttaaaatcccttagaatcatgatccaatacacccactaaa 22552088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 24776287 - 24776244
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  24776287 aaagtcttttaaaatcccttagaatcatgatccaatacaccccc 24776244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16269623 - 16269581
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacccc 43  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  16269623 aaagtcttttaaaatcccttagaatcatgatccaatacacccc 16269581  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 20605084 - 20605042
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacccc 43  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  20605084 aaagtcttttaaaatcccttagaatcatgatccaatacacccc 20605042  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12407312 - 12407268
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    ||||||||||||||||  |||||||||||||||||||||||||||    
T  12407312 aaagtcttttaaaatctcttagaatcatgatccaatacaccccct 12407268  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14198854 - 14198894
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacc 41  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  14198854 aaagtcttttaaaatcccttagaatcatgatccaatacacc 14198894  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 44765707 - 44765667
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacc 41  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  44765707 aaagtcttttaaaatcccttagaatcatgatccaatacacc 44765667  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 378911 - 378868
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||||||| ||| ||||||||||||||||| ||||    
T  378911 aaagtcttttaaaatcccttataatcatgatccaatacatcccc 378868  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 1789370 - 1789331
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacaccccc 44  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  1789370 tcttttaaaatctcttagaatcatgatccaatacaccccc 1789331  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 5093317 - 5093352
Alignment:
Q  3 agtcttttaaaatcctttagaatcatgatccaatac 38  Q
    ||||||||||||||| ||||||||||||||||||||    
T  5093317 agtcttttaaaatcccttagaatcatgatccaatac 5093352  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35316994 - 35316947
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaa 48  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||| ||||    
T  35316994 aaagttttttaaaatcccttagaatcatgattcaatacaccccttaaa 35316947  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14920624 - 14920666
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacacccc 43  Q
    ||||||||||||||||||||| |||||  ||||||||||||||    
T  14920624 aaagtcttttaaaatcctttaaaatcacaatccaatacacccc 14920666  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28844487 - 28844439
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaat 49  Q
    |||||||||||||||||  ||||||| | |||||||||| |||||||||    
T  28844487 aaagtcttttaaaatcccatagaatcctaatccaatacatcccctaaat 28844439  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 41725924 - 41725968
Alignment:
Q  179 attttacaatttcatgaatgtatttgtcaattcacaaaaatcaaa 223  Q
    ||||||||||||||  ||| || ||||||||||||||||||||||    
T  41725924 attttacaatttcacaaatatacttgtcaattcacaaaaatcaaa 41725968  T

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Target: scaffold0113 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39129 - 39178
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccctaaatt 50  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  39129 aaagtcttttaaaatccattagaatcatgatccaatacacccccttaatt 39178  T

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Target: scaffold0037 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 100142 - 100098
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccccct 45  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  100142 aaagtcttttaaaatcccttagaatcatgatccaatacaccccct 100098  T

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Target: scaffold0151 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 38800 - 38837
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  38800 tcttttaaaatcccttagaatcatgatccaatacaccc 38837  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 102067 - 102026
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaatacaccc 42  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  102067 aaagtcttttaaaatcccttagaatcatgatctaatacaccc 102026  T

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Target: scaffold0651 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 8689 - 8654
Alignment:
Q  5 tcttttaaaatcctttagaatcatgatccaatacac 40  Q
    ||||||||||||| ||||||||||||||||||||||    
T  8689 tcttttaaaatcccttagaatcatgatccaatacac 8654  T

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Target: scaffold0922 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4131 - 4083
Alignment:
Q  1 aaagtcttttaaaatcctttagaatcatgatccaataca-ccccctaaa 48  Q
    |||||||||||||||||| ||||||| | |||||||||| |||||||||    
T  4131 aaagtcttttaaaatcctatagaatcctaatccaatacatccccctaaa 4083  T

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