View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9802_low_25 (Length: 250)

Name: NF9802_low_25
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9802_low_25
NF9802_low_25
[»] chr1 (5 HSPs)
chr1 (1-242)||(51456346-51456587)
chr1 (64-242)||(51497894-51498072)
chr1 (65-242)||(51481047-51481224)
chr1 (146-242)||(30206200-30206296)
chr1 (64-124)||(30206118-30206178)
[»] chr5 (5 HSPs)
chr5 (65-242)||(43161278-43161455)
chr5 (64-242)||(27397053-27397231)
chr5 (1-41)||(43161455-43161495)
chr5 (178-239)||(20868096-20868160)
chr5 (62-118)||(20867980-20868036)
[»] chr8 (1 HSPs)
chr8 (153-242)||(26357749-26357838)
[»] scaffold0020 (1 HSPs)
scaffold0020 (157-239)||(136744-136829)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 51456587 - 51456346
Alignment:
Q  1 tagaaacaagtttcacacaaggataataaacatgaattccagtaagaacccctccatcacaaggattgagaaatcaaacaaacctcacaccaatctaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51456587 tagaaacaagtttcacacaaggataataaacatgaattccagtaagaacccctccatcacaaggattgagaaatcaaacaaacctcacaccaatctaagc 51456488  T
Q  101 aattaactgccttcacatccaaaactacatcgtatttggagttggttatttgacggaatgcacgccacatgactagtggttcccagcttaaaccagatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51456487 aattaactgccttcacatccaaaactacatcgtatttggagttggttatttgacggaatgcacgccacatgactagtggttcccagcttaaaccagatgt 51456388  T
Q  201 gcattcaagtacattgctgacaattacaggctcccctttgct 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  51456387 gcattcaagtacattgctgacaattacaggctcccctttgct 51456346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 64 - 242
Target Start/End: Complemental strand, 51498072 - 51497894
Alignment:
Q  64 gattgagaaatcaaacaaacctcacaccaatctaagcaattaactgccttcacatccaaaactacatcgtatttggagttggttatttgacggaatgcac 163  Q
    |||| ||||||  ||||||||||||||||||||||||||| || ||||||||||||||||| |   | ||  ||||  ||| |||| || ||||||||||    
T  51498072 gattaagaaattgaacaaacctcacaccaatctaagcaatcaattgccttcacatccaaaagtgttttgtgcttggtattgcttatctgtcggaatgcac 51497973  T
Q  164 gccacatgactagtggttcccagcttaaaccagatgtgcattcaagtacattgctgacaattacaggctcccctttgct 242  Q
    |||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51497972 gccacatgacaagcggttcccagcttaaaccagatgtacattcaagtacattgctgacaattacaggctcccctttgct 51497894  T

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Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 65 - 242
Target Start/End: Complemental strand, 51481224 - 51481047
Alignment:
Q  65 attgagaaatcaaacaaacctcacaccaatctaagcaattaactgccttcacatccaaaactacatcgtatttggagttggttatttgacggaatgcacg 164  Q
    ||||||||||  ||||||||||||||||||||||||||| || ||||| ||||||||||| |   | ||  | ||  ||  |||| ||||||||||||||    
T  51481224 attgagaaattgaacaaacctcacaccaatctaagcaatcaattgcctccacatccaaaagtgttttgtgctgggtatttcttatctgacggaatgcacg 51481125  T
Q  165 ccacatgactagtggttcccagcttaaaccagatgtgcattcaagtacattgctgacaattacaggctcccctttgct 242  Q
    ||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||    
T  51481124 ccacatgacaagcggttcccagcttaaaccagttgtacattcaagtacattgctgataattacaggctcccctttgct 51481047  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 242
Target Start/End: Original strand, 30206200 - 30206296
Alignment:
Q  146 ttatttgacggaatgcacgccacatgactagtggttcccagcttaaaccagatgtgcattcaagtacattgctgacaattacaggctcccctttgct 242  Q
    |||| ||||||||||||||||||||||| |  ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  30206200 ttatctgacggaatgcacgccacatgacaaacggttcccagcttaaaccagatgtacattcaagtacattgctaacaattataggctcccctttgct 30206296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 30206118 - 30206178
Alignment:
Q  64 gattgagaaatcaaacaaacctcacaccaatctaagcaattaactgccttcacatccaaaa 124  Q
    |||||||||||  ||||||||||||||||| ||||||||| ||  |  |||||||||||||    
T  30206118 gattgagaaattgaacaaacctcacaccaacctaagcaatcaatagttttcacatccaaaa 30206178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 65 - 242
Target Start/End: Complemental strand, 43161455 - 43161278
Alignment:
Q  65 attgagaaatcaaacaaacctcacaccaatctaagcaattaactgccttcacatccaaaactacatcgtatttggagttggttatttgacggaatgcacg 164  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||||| || |||||| |||||| ||||| |||    
T  43161455 attgagaaatcaaacaaacctcacaccaatctatgcaattaacagccttcccatccaaaacttcatcgtatttagaattggttttttgacagaatgaacg 43161356  T
Q  165 ccacatgactagtggttcccagcttaaaccagatgtgcattcaagtacattgctgacaattacaggctcccctttgct 242  Q
    ||||||||||  ||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||    
T  43161355 ccacatgacttttggttcccagcttaaaccagatgtatattcaagtacatttctgacaattacaggctcccctttgct 43161278  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 64 - 242
Target Start/End: Complemental strand, 27397231 - 27397053
Alignment:
Q  64 gattgagaaatcaaacaaacctcacaccaatctaagcaattaactgccttcacatccaaaactacatcgtatttggagttggttatttgacggaatgcac 163  Q
    |||||||||||  |||||||||| |||||||||||||||| || |||||| |||||||||| |   | ||  |||   ||| |||| ||||| |||||||    
T  27397231 gattgagaaattgaacaaacctcgcaccaatctaagcaatcaagtgccttaacatccaaaagtgacttgttcttgtttttgtttatctgacgaaatgcac 27397132  T
Q  164 gccacatgactagtggttcccagcttaaaccagatgtgcattcaagtacattgctgacaattacaggctcccctttgct 242  Q
    |||||||||| |  || ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27397131 gccacatgacaaacggctcccaacttaaaccagatgtacattcaagtacattgctgacaattacaggctcccctttgct 27397053  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 43161495 - 43161455
Alignment:
Q  1 tagaaacaagtttcacacaaggataataaacatgaattcca 41  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  43161495 tagaaacaagtatcacacaaagataataaacatgaattcca 43161455  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 20868096 - 20868160
Alignment:
Q  178 ggttcccagcttaaaccagatgtgc---attcaagtacattgctgacaattacaggctccccttt 239  Q
    ||||||||||||||||||||||| |   ||||||| || ||| |||||||||||||||| |||||    
T  20868096 ggttcccagcttaaaccagatgtacttgattcaagaacgttgttgacaattacaggctcaccttt 20868160  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 20867980 - 20868036
Alignment:
Q  62 aggattgagaaatcaaacaaacctcacaccaatctaagcaattaactgccttcacat 118  Q
    |||||| ||||||| |||||||||  ||||||| |||||||| || |||||||||||    
T  20867980 aggattaagaaatcgaacaaacctggcaccaatttaagcaatcaattgccttcacat 20868036  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 26357838 - 26357749
Alignment:
Q  153 acggaatgcacgccacatgactagtggttcccagcttaaaccagatgtgcattcaagtacattgctgacaattacaggctcccctttgct 242  Q
    |||||||||||| | |||||||  |||||||||||||||||||||||| || ||||| || || ||||||||||||||||||||||||||    
T  26357838 acggaatgcacggctcatgactgttggttcccagcttaaaccagatgtacaatcaagcacgttactgacaattacaggctcccctttgct 26357749  T

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Target: scaffold0020 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 136744 - 136829
Alignment:
Q  157 aatgcacgccacatgactagtggttcccagcttaaaccagatgtgc---attcaagtacattgctgacaattacaggctccccttt 239  Q
    |||||| |||||||||| || ||||||||||||| || |||||| |   ||||||  || ||||| ||||||||||||||||||||    
T  136744 aatgcatgccacatgacgagcggttcccagcttatactagatgtacttgattcaatgacgttgctaacaattacaggctccccttt 136829  T

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