View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9802_low_29 (Length: 242)
Name: NF9802_low_29
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 41890059 - 41889827
Alignment:
| Q |
1 |
cagcatgtgaacttacaccattagatttcattcaactcattgatttcaatagaaagatgcaactaaaggactaatctcaagttgatgatggaacacttat |
100 |
Q |
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| T |
41890059 |
cagcatgtgaacttacaccattagatttcatacaactcattgatttcaagagaaagatgcaactaaaggactaatctcaagttgatgatggaacacttat |
41889960 |
T |
|
| Q |
101 |
taagagtacattttaaagctcaaactttagc---------agaacactttaagaaagctagcaaacaagacatccatgaagcaagaagtatttcttatct |
191 |
Q |
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| T |
41889959 |
taagagtacattttaaagctcaaactttagcagaagctgcagaacactttaagaaagctagcaaacaagacatccatgaagcaagaagtatttcttatct |
41889860 |
T |
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| Q |
192 |
ttgtcacttaaacaaaaaacgaatcggagctatt |
225 |
Q |
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| T |
41889859 |
ttgtcagttaaac-aaaaacgaatcggagctatt |
41889827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 41901924 - 41901850
Alignment:
| Q |
107 |
tacattttaaagctcaaactttagcagaacactttaagaaagctagcaaacaagacatccatgaagcaagaagta |
181 |
Q |
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| T |
41901924 |
tacatttcagagctcaaacttcagcagaagacttcaagaatgctagcgaacaaggcatccatgacgcaagaagta |
41901850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 27922218 - 27922296
Alignment:
| Q |
107 |
tacattttaaagctcaaactttagcagaacactttaagaaagctagcaaacaagacatccatgaagcaagaagtatttc |
185 |
Q |
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| T |
27922218 |
tacatttcagagctcaaacttcagcagaagacttcaacaatgctagcaaacaaggcatccttgacgcaagaagtatttc |
27922296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 27921376 - 27921448
Alignment:
| Q |
5 |
atgtgaacttacaccattagatttcattcaactcattgatttcaatagaaagatgcaactaaaggactaatct |
77 |
Q |
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|||||||||||||| ||||||||||| ||| ||| ||||||||| |||||| || ||||||| || |||||| |
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| T |
27921376 |
atgtgaacttacacgattagatttcacacaaatcactgatttcaagagaaagttgtaactaaatgattaatct |
27921448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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