View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9802_low_31 (Length: 239)
Name: NF9802_low_31
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 36025788 - 36025566
Alignment:
| Q |
1 |
ttactcctttactcacgcacagccacaaaggcttgactccgttaccgactcaagtttggggtcgactcgaactagattcagtcgaattctttccataacg |
100 |
Q |
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| T |
36025788 |
ttactcctttactcacgcacagccacaaaggcttgactccgttaccgactcaagttcggggtcgactcgaactagattcagtcgaattctttccataacg |
36025689 |
T |
|
| Q |
101 |
gattttcgcgccaaaggcgatggtttttaaaataacacacgggattgaacaaggacctccaactcattttcccttggctcaagccacttgagttacccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025688 |
gattttcgcgccaaaggcgatggtttttaaaataacacacgggattgaacaaggacctccaactcattttcccttggctcaagccacttgagttacccaa |
36025589 |
T |
|
| Q |
201 |
ccccccacacacatgtaattatt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
36025588 |
ccccccacacacatgtaattatt |
36025566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 33084966 - 33085022
Alignment:
| Q |
152 |
aggacctccaactcattttcccttggctcaagccacttgagttacccaaccccccac |
208 |
Q |
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|||||||||||||| | |||||| |||||| ||| ||||| ||||||||||||||| |
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| T |
33084966 |
aggacctccaactccatatcccttagctcaaaccagttgagctacccaaccccccac |
33085022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 33872854 - 33872906
Alignment:
| Q |
155 |
acctccaactcattttcccttg-gctcaagccacttgagttacccaacccccc |
206 |
Q |
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|
| T |
33872854 |
acctccaactccttttccctttagctcaaaccagttgagttacccaacccccc |
33872906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 16934346 - 16934414
Alignment:
| Q |
155 |
acctccaactcattttcccttggctcaagccacttgagttacccaaccccccacacacatgtaattatt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| |||| |
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|
| T |
16934346 |
acctccaactcattttcccttggctcaaacaacttgagttacccaaccccccacatacatgtaaatatt |
16934414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 28409470 - 28409521
Alignment:
| Q |
153 |
ggacctccaactcattttcccttggctcaagccacttgagttacccaacccc |
204 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||| ||||||||||||||||| |
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| T |
28409470 |
ggacctccaactcatcttcccttagctcaacccagttgagttacccaacccc |
28409521 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 28590403 - 28590456
Alignment:
| Q |
152 |
aggacctccaactcattttcccttggctcaagccacttgagttacccaaccccc |
205 |
Q |
| |
|
|||||||||||| | || |||||| |||||| ||| |||||||||||||||||| |
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| T |
28590403 |
aggacctccaacaccttgtcccttagctcaaaccagttgagttacccaaccccc |
28590456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 26009838 - 26009784
Alignment:
| Q |
152 |
aggacctccaactcattttcccttggctcaagccacttgagttacccaacccccc |
206 |
Q |
| |
|
|||||||||||||| || ||||||||||||| ||| ||||| ||||||||||||| |
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|
| T |
26009838 |
aggacctccaactctttatcccttggctcaaaccagttgagctacccaacccccc |
26009784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 5251894 - 5251942
Alignment:
| Q |
152 |
aggacctccaactcattttcccttggctcaagccacttgagttacccaa |
200 |
Q |
| |
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|||||||||||||| |||||||||||||||| ||| ||||| ||||||| |
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|
| T |
5251894 |
aggacctccaactccttttcccttggctcaaaccagttgagctacccaa |
5251942 |
T |
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