View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9802_low_5 (Length: 398)
Name: NF9802_low_5
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 19310237 - 19310618
Alignment:
| Q |
1 |
ttggataactataagaaagtgaataagcaggttgatgatgaaactgataaggaacctatagtcaagaagtaagtgaataaagtctcctaatcaggtttac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19310237 |
ttggataactataagaaagtgaataagcaggttgatgatcaaactgataaggaacctatagtcaagaagtaagtgaataa-gtctcctaatcaggtttac |
19310335 |
T |
|
| Q |
101 |
atgaaacttagggatggtagaattcagaaagaaacaataaggaggtgttgcagactgaaggaactgagaaagcaaacaataactcagttaacttgtagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19310336 |
atgaaacttagggatggtagaattcagaaagaaacaataaggaggtgttgcagactgaaggaactgagaaagcaaacaataattcagttaacttgtagag |
19310435 |
T |
|
| Q |
201 |
caagcaaactgatttatacaaaggcgaaaaccccacaacaggtgtaattccagcagctcaggctattgctggatccagtgacacaactcatttacagaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19310436 |
caagcaaactgatttatacaaaggcgaaaaccctacaacaggtgtaattccagcagctcaggctattgctggatccagtgacacaactcatttacagaat |
19310535 |
T |
|
| Q |
301 |
cttgaagttcaaaacaattttgaatcactgctattagacgatgaagagactcccgataaagaagttaacaatgaactagtaat |
383 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19310536 |
cttaaagttcaaaacaattttgaatcactgctattagacgatgaagagactcccgataaagaagttaacaatgaactagtaat |
19310618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University