View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9802_low_7 (Length: 374)
Name: NF9802_low_7
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 4903813 - 4903453
Alignment:
| Q |
1 |
tgcagcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggaggaattaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4903813 |
tgcagcatgccaaattaatctaccacccctgcgcagctttttgttcaaaaactcaccattccaacattgccacataataaacagattaggaggaattaaa |
4903714 |
T |
|
| Q |
101 |
aaattaaattccaaccactccataagcttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaattattgcacc |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
4903713 |
aaattaaattccaaccactccataagcttacaccagaccttaccaaccccttcgcaatgaagaaaaatatgtgttgaatcttcaatcgaattattgcacc |
4903614 |
T |
|
| Q |
201 |
aaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4903613 |
aaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcgtgaagaagtttccaagtaaaaaccac |
4903514 |
T |
|
| Q |
301 |
cactttcgacg--gccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatca |
359 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4903513 |
cactttcgacggtgccgggctcttccaaatatgcgagaaaaccttcctcgggagaccatca |
4903453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 1557230 - 1557161
Alignment:
| Q |
60 |
tccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataagctt |
129 |
Q |
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|||||||||||||||||||||||||||| || || |||||||||||||| |||| ||| ||||||||||| |
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| T |
1557230 |
tccaacattcccacataataaacagatttggggggattaaaaaattaaagtccagccagtccataagctt |
1557161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 1557054 - 1556987
Alignment:
| Q |
236 |
tttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccac |
303 |
Q |
| |
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||||| || ||||||||| ||||||| || |||||||| || ||||||||||||| |||||||||||| |
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| T |
1557054 |
tttctaattgcaaggttggtctttgtaggaattctatcgtggagaagtttccaagaaaaaaccaccac |
1556987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 271
Target Start/End: Original strand, 22153748 - 22154014
Alignment:
| Q |
5 |
gcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggaggaattaaaaaat |
104 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||| |
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| T |
22153748 |
gcatgccaaattaatctaccaccccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagagggattaaaaaat |
22153847 |
T |
|
| Q |
105 |
taaattccaaccactccataagcttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaattattgcaccaaac |
204 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||| |
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| T |
22153848 |
taaattccaaccactccataagcttacaccagaccttaccaaccccttcgcaatgaagaaaaagatgtgttaaatctttaatcgaattgttgcaccaaac |
22153947 |
T |
|
| Q |
205 |
acactgtagagagctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattcta |
271 |
Q |
| |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22153948 |
acactgaagagagctatccggtgggagcgagttccttatagcaaggttgatctttgttgggattcta |
22154014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 271
Target Start/End: Original strand, 22209663 - 22209929
Alignment:
| Q |
5 |
gcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggaggaattaaaaaat |
104 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||| |
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| T |
22209663 |
gcatgccaaattaatctaccaccccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagagggattaaaaaat |
22209762 |
T |
|
| Q |
105 |
taaattccaaccactccataagcttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaattattgcaccaaac |
204 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||| |
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| T |
22209763 |
taaattccaaccactccataagcttacaccagaccttaccaaccccttcgcaatgaagaaaaagatgtgttaaatctttaatcgaattgttgcaccaaac |
22209862 |
T |
|
| Q |
205 |
acactgtagagagctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattcta |
271 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22209863 |
acactgaagagagctatccggtgggagcgagttccttatagcaaggttgatctttgttgggattcta |
22209929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 22154013 - 22154083
Alignment:
| Q |
291 |
taaaaaccaccactttcgacgg--ccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatca |
359 |
Q |
| |
|
||||||||| ||||| |||||| |||||||||||||||||||||| |||||| || |||||||||||||| |
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| T |
22154013 |
taaaaaccatcacttccgacggtgccgggctcttccaaatatgcgaaaaaaccttcgtcgggagaccatca |
22154083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 22209928 - 22209998
Alignment:
| Q |
291 |
taaaaaccaccactttcgacgg--ccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatca |
359 |
Q |
| |
|
||||||||| ||||| |||||| |||||||||||||||||||||| |||||| || |||||||||||||| |
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| T |
22209928 |
taaaaaccatcacttccgacggtgccgggctcttccaaatatgcgaaaaaaccttcgtcgggagaccatca |
22209998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 41450828 - 41450779
Alignment:
| Q |
55 |
accattccaacattcccacataataaacagattaggaggaattaaaaaat |
104 |
Q |
| |
|
|||||||||||||| ||| | |||||||| ||| |||||||||||||||| |
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| T |
41450828 |
accattccaacattgccaaagaataaacaaatttggaggaattaaaaaat |
41450779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 34821645 - 34821709
Alignment:
| Q |
242 |
atagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccacttt |
306 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||| |
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|
| T |
34821645 |
atagcaaggttgatttttgttgggattctatcatgaagaagtttccaagcaaagacgaccacttt |
34821709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 38185505 - 38185584
Alignment:
| Q |
58 |
attccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataagcttactccaga |
137 |
Q |
| |
|
|||||||||||||||| | ||||||||||| || ||||||| |||||| ||||||| |||||||||||||| || ||||| |
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| T |
38185505 |
attccaacattcccacgtgataaacagattcggtggaattataaaattgaattccagccactccataagctcacgccaga |
38185584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 53562202 - 53562135
Alignment:
| Q |
56 |
ccattccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccat |
123 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| || ||||||| ||||||||| |||||||| ||||| |
|
|
| T |
53562202 |
ccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattccat |
53562135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 34821457 - 34821538
Alignment:
| Q |
54 |
caccattccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataagcttactcca |
135 |
Q |
| |
|
||||||||||||| | |||||| ||||||| ||| ||||| |||| || ||||| || ||||||||||| ||||||||||| |
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| T |
34821457 |
caccattccaacaattccacatgataaacaaattcggagggattataatattaatgtctaaccactccatgagcttactcca |
34821538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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