View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9802_low_8 (Length: 368)
Name: NF9802_low_8
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 36878036 - 36878367
Alignment:
| Q |
20 |
tgacttgcaagcatagagtgatgaga---ctgttgtcttttccatctatgggtatcatctacaataaatgatgtgccaataagcacagctgagtgttaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36878036 |
tgacttgcaagcatagagtgatgagaatactgttgtcttttccatctatgggtatcatctacaataaatgatgtgccaataagcacagctgagtgttaga |
36878135 |
T |
|
| Q |
117 |
atagattgtcaggaaaaatgttgtattctcatgtcttccttggcaattggcatatataatcacggcatatcttccttgtcatgaaaaagagccaccttta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36878136 |
atagattgtcaggaaaaatgttgtattctcatgtcttccttgg-------catatataatcacggcatatcttccttgtcaagaaaaagagccaccttta |
36878228 |
T |
|
| Q |
217 |
caattagacaattttcactcttattacaacactttcactaacatttaatataggtccgtgttctatctatgctcaattaatctgttagttgcagatttgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36878229 |
caattagacaattttcactcttattacaacactttcacgcacatttagtataggtccgtgttctatctatgctcaattaatctgttagttgcagatttgt |
36878328 |
T |
|
| Q |
317 |
agctaaaaacctggtactcttggagttcattttgtgtct |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36878329 |
agctaaaaacctggtactcttggagttcattttgtgtct |
36878367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 36878627 - 36878729
Alignment:
| Q |
53 |
cttttccatctatgggtatcatctacaataaatgatgtgccaataagcacagctgagtgttagaatagattgtcaggaaaaatgttgtattctcatgtct |
152 |
Q |
| |
|
|||||| || |||||||||||||||||| |||||||| || ||||||| |||||||||||||| |||||||||||||||||| ||| |||| |||||| |
|
|
| T |
36878627 |
cttttcaatttatgggtatcatctacaaggaatgatgtaccgataagcatagctgagtgttagaggagattgtcaggaaaaatgatgtgttcttatgtct |
36878726 |
T |
|
| Q |
153 |
tcc |
155 |
Q |
| |
|
||| |
|
|
| T |
36878727 |
tcc |
36878729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 329
Target Start/End: Original strand, 36877844 - 36877963
Alignment:
| Q |
212 |
ctttacaattagacaattttcactcttattacaacactttcactaacatttaatataggtccgtgttct-atctatgctcaatt--aatctgttagttgc |
308 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||| ||||| || ||| ||||||| ||||||| || |||| |||||| |||||||||||||| |
|
|
| T |
36877844 |
ctttacaattagacagtttccactcttattacaacgctttcgtgtgca-ttagtataggtttgtgttctgatatatgttcaattaaaatctgttagttgc |
36877942 |
T |
|
| Q |
309 |
agatttgtagctaaaaacctg |
329 |
Q |
| |
|
||| |||||||| ||||||| |
|
|
| T |
36877943 |
agacctgtagctagaaacctg |
36877963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 39462746 - 39462795
Alignment:
| Q |
298 |
ctgttagttgcagatttgtagctaaaaacctggtactcttggagttcatt |
347 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || | |||||||||||| |
|
|
| T |
39462746 |
ctgttagttgcagatttgtagctaaagacctaatatttttggagttcatt |
39462795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University