View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9802_low_9 (Length: 363)
Name: NF9802_low_9
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 48713498 - 48713172
Alignment:
| Q |
18 |
caaagctgtggtggaagtgttgccttatgcattgccatatgaatttgttccatttgcaaagtctgatggtgaaatggcaggaacctacaatgatttgatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48713498 |
caaagctgtggtggaagtgttgccttatgcattgccatatgaatttgttccatttgcaaagtctgatggtgagatggcaggaacctacaatgatttgatc |
48713399 |
T |
|
| Q |
118 |
actcaactttattatggggtaatctctttttctcatatcaagatccctctttattgcataaataaataatcaaattagttcatgaaattgtaagaaatgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48713398 |
actcaactttattatggggtaatctctttttctcatatcaagatccctctttattgcataaataaataatcaaattagttcatgaaattgtaagaaatgg |
48713299 |
T |
|
| Q |
218 |
tcaaaatagtccctacttttgaagaatttaaaaacacatcctttgaaataataaaaagtcatttattttgtcactccttcacgttgaccatacatcattt |
317 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
48713298 |
tcaaaatagtccctacttttgaaaaatttaaaaacacatcctttgaaataataaaaag---------ttgtcactccttcatgttgaccatacatcattt |
48713208 |
T |
|
| Q |
318 |
tcaatacactatggagtaacgacttatttgcctatg |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
48713207 |
tcaatacactatggagtaacgacttatttgcctatg |
48713172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 48701392 - 48701255
Alignment:
| Q |
18 |
caaagctgtggtggaagtgttgccttatgcattgccatatgaatttgttccatttgcaaagtctgatggtgaaatggcaggaacctacaatgatttgatc |
117 |
Q |
| |
|
|||||||||| | || || ||||||||||| || |||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
48701392 |
caaagctgtgctagatgttttgccttatgccttaccatatgaatttgttcaatttgcaaagcctgatggtgagatggcaggaacctacaatgagttgatc |
48701293 |
T |
|
| Q |
118 |
actcaactttattatggggtaatctctttttctcatat |
155 |
Q |
| |
|
| ||||||| | | ||||||| ||||| ||||||||| |
|
|
| T |
48701292 |
aatcaacttcacgacggggtaacctcttcttctcatat |
48701255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University