View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9803_high_3 (Length: 366)
Name: NF9803_high_3
Description: NF9803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9803_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 353
Target Start/End: Complemental strand, 44371615 - 44371295
Alignment:
| Q |
7 |
ccatgtacagttggtaattccccaacttttgaatttctggcttcatctcatgttcttctacttcttcttcatgttcataataattttgatcctttggtgt |
106 |
Q |
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| T |
44371615 |
ccatgtacagttggtaattccccaacttttgaatttctggcttcatctcatgttcttctacttcttc---atgttcataataattttgaacctttggcgt |
44371519 |
T |
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| Q |
107 |
gttactagtagtgaatttctcaatcttgcctttcttgttgtaaattctacacaacacccaatcatcaagctgcaaattgcaaagcaaaccacaatcagat |
206 |
Q |
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| T |
44371518 |
gttactagtattgaatttctcaatcttgcctttcttgttgtaaattctacacaacacccaatcatcaagctgcaaattgcaaagcaaaccacaatcagat |
44371419 |
T |
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| Q |
207 |
aaatccattttacatacatcattaaatgaatgaatgaacctaaaaagttctaaaaattatttaagtaactaaaaaatgttgtggcagacacaacaaaaca |
306 |
Q |
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| T |
44371418 |
aaa-cca-catacatacatcatta----aatgaatgaacctaa--------------tatttaagtaactgaaaaatgttgtggcagac---acaaaaca |
44371342 |
T |
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| Q |
307 |
taccctcaagttgtttttctttccggctgatctatcaacgttggcaa |
353 |
Q |
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| T |
44371341 |
taccctcaagttgtttttctttccggctgatctatcaacgttggcaa |
44371295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 39493109 - 39493049
Alignment:
| Q |
121 |
atttctcaatcttgcctttcttgttgtaaattctacacaacacccaatcatcaagctgcaa |
181 |
Q |
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| T |
39493109 |
atttctcaatcttccctttcttgttgtaaattcgacacaacacccaatcatcgagctgcaa |
39493049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 249
Target Start/End: Complemental strand, 21122664 - 21122636
Alignment:
| Q |
221 |
tacatcattaaatgaatgaatgaacctaa |
249 |
Q |
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| T |
21122664 |
tacatcattaaatgaatgaatgaacctaa |
21122636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 34120993 - 34121029
Alignment:
| Q |
218 |
acatacatcattaaatgaatgaatgaacctaaaaagt |
254 |
Q |
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| T |
34120993 |
acatacatcattaaatgaatgaataaacttaaaaagt |
34121029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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