View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9803_high_5 (Length: 219)
Name: NF9803_high_5
Description: NF9803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9803_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 31786346 - 31786396
Alignment:
| Q |
17 |
actattatacgttgtcggacatacttgtgtttcggtaaccctttctcatag |
67 |
Q |
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| T |
31786346 |
actattatacgttgtcggacatacttgtgtttaggtaaccctttctcatag |
31786396 |
T |
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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 31786470 - 31786502
Alignment:
| Q |
141 |
caagttactattgggaaaactcgtgccttctat |
173 |
Q |
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| T |
31786470 |
caagttactattgggaaaactcgtgccttctat |
31786502 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 202
Target Start/End: Complemental strand, 11519982 - 11519947
Alignment:
| Q |
167 |
cttctatctatatactaataagaaaattaatgtcct |
202 |
Q |
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| T |
11519982 |
cttctatatatatactaataagaaaattaatgtcct |
11519947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 202
Target Start/End: Original strand, 11267707 - 11267736
Alignment:
| Q |
173 |
tctatatactaataagaaaattaatgtcct |
202 |
Q |
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| T |
11267707 |
tctatatactaataagaaaattaatgtcct |
11267736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 7359015 - 7359048
Alignment:
| Q |
169 |
tctatctatatactaataagaaaattaatgtcct |
202 |
Q |
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| T |
7359015 |
tctatatatatactaataagaaaattaatgtcct |
7359048 |
T |
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