View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9803_low_1 (Length: 616)
Name: NF9803_low_1
Description: NF9803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9803_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 566; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 18 - 603
Target Start/End: Complemental strand, 34947479 - 34946894
Alignment:
| Q |
18 |
ctaaaaacgacttatacaaaccaagcgagcttttccaagctcaaacacacttatacaaaatcatgtatagttaccttaatccaatgtctgtcaaatgggc |
117 |
Q |
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| T |
34947479 |
ctaaaaatgacttatacaaaccaagcgagcttttccaagctcaaacacacttatacaaaatcatgtatagttaccttaatccaatgtctgtcaaatgggc |
34947380 |
T |
|
| Q |
118 |
acttgaccttaaaataccagatatcatccacaaccatcgccaagccattactctttctgagctcatttcagctcttaaggttccacaatcaaaagaaaca |
217 |
Q |
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| T |
34947379 |
acttgaccttaaaataccagatatcatccacaaccatcgccaagccattactctttctgagctcatttcagctcttaaggttccacaatcaaaagaaaca |
34947280 |
T |
|
| Q |
218 |
tgcgtccgtcgactaatgcgcttgttagcacacattgatttctttgcaattgtcaaaattgatgaaaccaaagaaggatatactcttactccaacatcac |
317 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34947279 |
tgcgtcggtcgactaatgcgcttgttagcacacattgatttctttgcaattgtcaaaattgatgaaaccaaagaaggatatactcttactccaacatcac |
34947180 |
T |
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| Q |
318 |
aactccttgtctctaccactgatcattgtttatcttcaatggttcggttgctgaacagtccacctattgttggctcgtacaatcatttagggaaatggac |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34947179 |
aactccttgtctctaccactgatcattgtttatcttcaatggttcggttgctgaacattccacctattgttggctcgtacaatcatttagggaaatggac |
34947080 |
T |
|
| Q |
418 |
ttgtggagaggatctcacaattgttgagactgcattaggccctgaaagttattgggattttattcatcaaaattcttcatacttgaagacttttaatgat |
517 |
Q |
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| T |
34947079 |
ttgtggagaggatctcacaattgttgagactgcattaggccctgaaagttattgggattttattcatcaaaattcttcatacttgaagacttttaatgat |
34946980 |
T |
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| Q |
518 |
gctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttgtagggattggttcattggttgatgt |
603 |
Q |
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| T |
34946979 |
gctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttcaagggattggttcattggttgatgt |
34946894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 603
Target Start/End: Complemental strand, 34951950 - 34951365
Alignment:
| Q |
18 |
ctaaaaacgacttatacaaaccaagcgagcttttccaagctcaaacacacttatacaaaatcatgtatagttaccttaatccaatgtctgtcaaatgggc |
117 |
Q |
| |
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||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||| |||||||| |
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| T |
34951950 |
ctaaaaatgacttatacaaaccaagtgagcttttccaagctcaaactcacttatacaaaatcatgtatggtttccttaatccaatgtctgttaaatgggc |
34951851 |
T |
|
| Q |
118 |
acttgaccttaaaataccagatatcatccacaaccatcgccaagccattactctttctgagctcatttcagctcttaaggttccacaatcaaaagaaaca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34951850 |
acttgaccttaaaataccagatatcatccacaaccatggccatgccatgactctttctgagctcatttcatctcttaaggttccacaatcaaaagaaaca |
34951751 |
T |
|
| Q |
218 |
tgcgtccgtcgactaatgcgcttgttagcacacattgatttctttgcaattgtcaaaattgatgaaaccaaagaaggatatactcttactccaacatcac |
317 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
34951750 |
tgcgtccgtcgactcatgcgcttattagcacacattgatttctttgcaattgtcaaaattgatgaaaccaaagaaggatatgctcttacaccaacatcac |
34951651 |
T |
|
| Q |
318 |
aactccttgtctctaccactgatcattgtttatcttcaatggttcggttgctgaacagtccacctattgttggctcgtacaatcatttagggaaatggac |
417 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||| | ||||||||||||||||||||||||| |
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| T |
34951650 |
aactccttgtctctgacactgatcattgtttatcttcaatggttcggttgctgaacactccaactcttgttgacgcgtacaatcatttagggaaatggac |
34951551 |
T |
|
| Q |
418 |
ttgtggagaggatctcacaattgttgagactgcattaggccctgaaagttattgggattttattcatcaaaattcttcatacttgaagacttttaatgat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| |
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| T |
34951550 |
ttgtggagaggatctcacaattgttgagaccgcattaggcccagaaagttattgggattttattcatgaaaattctgcatacttgaagagttttaatgat |
34951451 |
T |
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| Q |
518 |
gctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttgtagggattggttcattggttgatgt |
603 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
34951450 |
gctatggaaagtgattctcatgttgtgaggttggctttgagagattgtaattctgtttttgaagggattggttcattggttgatgt |
34951365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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