View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9803_low_2 (Length: 373)
Name: NF9803_low_2
Description: NF9803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9803_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 6 - 357
Target Start/End: Complemental strand, 7895643 - 7895278
Alignment:
| Q |
6 |
agaagcaaaggaggctccttttgatgtggaattacttgtaaaatctatgaaaacgattatacatagtaaaattaacaagcgtcacacttgatatgcgaag |
105 |
Q |
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| T |
7895643 |
agaaacaaaggaggctccttttgatgtggaattacttgtaaaatctatgaaaacgattatacatagtaaaattaacaagggtcacacttgatatgcaaag |
7895544 |
T |
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| Q |
106 |
ggttcctgcacgattcaaggtacaattggtaaggagcaaactattcaacttgttaaaagttgaaaatggctcgg-------------accaacgcaaaat |
192 |
Q |
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| T |
7895543 |
agttcctacacgattcaaggtacaattggtaaggagcaaactattcaacttgttaaaagttgaaaatggctcggcacgataattatcaccaacgcaaaat |
7895444 |
T |
|
| Q |
193 |
ccaaaattttgtagttgcaaactagttaatatatgtcggcaaattgaaagattttggaaacagtgtttcatgacctccattagggtaaagtacaaagc-t |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7895443 |
ccaaaattttgtagttgcaaactagttaatatatgtcggcaaattgaaagattttggaaacagtgtttcatgacctccattagggtaaagtacaaagctt |
7895344 |
T |
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| Q |
292 |
aagatgtgttaaagactgacatgaaaacatgcttggtaaaatgtgtccaatttcagtataggaaca |
357 |
Q |
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| T |
7895343 |
aagatgtgttaaagactgacatgaaaacatgcttggtaaaatgtgtccaatttcagtataggaaca |
7895278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 56 - 321
Target Start/End: Original strand, 7976298 - 7976572
Alignment:
| Q |
56 |
aaacgattatacatagtaaaattaacaagcgtcacacttgatatgcgaagggttcctgcacgattcaaggtacaattggtaaggagcaaactattcaact |
155 |
Q |
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| T |
7976298 |
aaacgagtatacatagttaagttcataagcgtagcacttgatatgcaaagggttcctgcaccactcaaggtagaattggtaatgatcaaactattcaact |
7976397 |
T |
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| Q |
156 |
tgttaaaagttgaaaatggctcgg-------------accaacgcaaaatccaaaattttgtagttgcaaactagttaatatatgtcggcaaattgaaag |
242 |
Q |
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| T |
7976398 |
tgttaaatgtcgaaaaaggctcagcacgatcattatcaccaaggcaaaatccaaaactctctagttgcaagctagttagt----gccggcaaattgaaag |
7976493 |
T |
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| Q |
243 |
attttggaaacagtgtttcatgacctccattagggtaaagtacaaagc-taagatgtgttaaagactgacatgaaaacat |
321 |
Q |
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| T |
7976494 |
attttggaaacaatgtttcatgacctccattagggt-aagtagaaagcttaagatgtgttaaagtatgacatgaaaacat |
7976572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 324
Target Start/End: Original strand, 45870213 - 45870307
Alignment:
| Q |
230 |
ggcaaattgaaagattttggaaacagtgtttcatgacctccattagggtaaagtacaaagc-taagatgtgttaaagactgacatgaaaacatgct |
324 |
Q |
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| T |
45870213 |
ggcaaatcgatagattttggaaacagtgtttcatgacgatcattagggtaga-tagaaagcttaagatgtgttagagtctgacatgaaaacatgct |
45870307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 181 - 302
Target Start/End: Original strand, 2996110 - 2996227
Alignment:
| Q |
181 |
ccaacgcaaaatccaaaattttgtagttgcaaactagttaatatatgtcggcaaattgaaagattttggaaacagtgtttcatgacctccattagggtaa |
280 |
Q |
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||||| |||||| ||||||||||||||| ||| ||||| ||| | || |||||||||||||||||||||| ||||||||||||||| ||| |||| |
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| T |
2996110 |
ccaacacaaaattcaaaattttgtagttacaagctagtcaat----gccgataaattgaaagattttggaaacattgtttcatgacctcctttattgtaa |
2996205 |
T |
|
| Q |
281 |
agtacaaagc-taagatgtgtta |
302 |
Q |
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| T |
2996206 |
a-tacaaagcttaagatgtgtta |
2996227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 2996044 - 2996095
Alignment:
| Q |
128 |
caattggtaaggagcaaactattcaacttgttaaaagttgaaaatggctcgg |
179 |
Q |
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||||||| || ||||||| |||||||| |||||||||| ||||||||||||| |
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| T |
2996044 |
caattggaaatgagcaaattattcaacctgttaaaagtcgaaaatggctcgg |
2996095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 45856400 - 45856484
Alignment:
| Q |
90 |
cacttgatatgcgaagggttcctgcacgattcaaggtacaattggtaaggagcaaactattcaacttgttaaaagttgaaaatgg |
174 |
Q |
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| T |
45856400 |
cacttgatatgcaaagggttactgcatccttcaaagcacaattgtaaaggaccaaactattcaaccgtttaaaggttgaaaatgg |
45856484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 44500999 - 44501059
Alignment:
| Q |
119 |
ttcaaggtacaattggtaaggagcaaactattcaacttgttaaaagttgaaaatggctcgg |
179 |
Q |
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|||| |||||||| | ||||| |||||||||||| ||||||| |||||||||||||||| |
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| T |
44500999 |
ttcacggtacaatcgtgaaggaccaaactattcaatctgttaaaggttgaaaatggctcgg |
44501059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 3978516 - 3978480
Alignment:
| Q |
229 |
cggcaaattgaaagattttggaaacagtgtttcatga |
265 |
Q |
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| T |
3978516 |
cggcaaattgagagattttggaaacggtgtttcatga |
3978480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 3978615 - 3978575
Alignment:
| Q |
139 |
gagcaaactattcaacttgttaaaagttgaaaatggctcgg |
179 |
Q |
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| T |
3978615 |
gagcaaactattcaacctgttaaaaatcgaaaatggctcgg |
3978575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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