View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9803_low_4 (Length: 224)
Name: NF9803_low_4
Description: NF9803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9803_low_4 |
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| [»] chr3 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22270428 - 22270651
Alignment:
| Q |
1 |
ggtagacatatactcatttggaatgttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtg |
100 |
Q |
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| T |
22270428 |
ggtagacatatactcatttggaatgttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtg |
22270527 |
T |
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| Q |
101 |
acttcaggtgtgagaccacaatccttgaacaagattaaagatgttgaagtgaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctg |
200 |
Q |
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| T |
22270528 |
acttcaggtgtgagaccacaatccttgaacaagataaaagatgctgaagtcaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctg |
22270627 |
T |
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| Q |
201 |
cggaggatttgctaaaggatcctt |
224 |
Q |
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| T |
22270628 |
ctgaggaattgctaaaggatcctt |
22270651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 22263412 - 22263189
Alignment:
| Q |
1 |
ggtagacatatactcatttggaatgttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22263412 |
ggtagacatatactcatttggaatgttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtg |
22263313 |
T |
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| Q |
101 |
acttcaggtgtgagaccacaatccttgaacaagattaaagatgttgaagtgaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctg |
200 |
Q |
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| T |
22263312 |
acttcaggtgtgagaccacaatccttgaacaagataaaagatgctgaagtcaagactttcatcgaaaagtgtcttgctcaaacaagggctagaccttctg |
22263213 |
T |
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| Q |
201 |
cggaggatttgctaaaggatcctt |
224 |
Q |
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| T |
22263212 |
ctgaggaattgctaaaggatcctt |
22263189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 22265134 - 22265310
Alignment:
| Q |
48 |
ttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatccttgaacaagattaaagatgttga |
147 |
Q |
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| T |
22265134 |
ttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatccttgaacaagataaaagatgctga |
22265233 |
T |
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| Q |
148 |
agtgaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctgcggaggatttgctaaaggatcctt |
224 |
Q |
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| T |
22265234 |
agtcaagactttcatcgaaaagtgtcttgctcaatcaagggctagaccttctgctgaggaattgctaaaggatcctt |
22265310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 45873837 - 45873620
Alignment:
| Q |
5 |
gacatatactcatttggaatgttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgactt |
104 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
45873837 |
gacatatactcatttggaatgttagtactggagatggtgacacgagagattccttatagtgaatgtgacaatgttgcaaagatatacaagaaggtgtcat |
45873738 |
T |
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| Q |
105 |
caggtgtgagaccacaatccttgaacaagattaaagatgttgaagtgaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctgcgga |
204 |
Q |
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|||| |||||||||||||||||||||||||| ||||| | ||||||||| ||||||| |||||||||||||| ||||||||| ||||||||||| || |
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| T |
45873737 |
caggagtgagaccacaatccttgaacaagataaaagacgcagaagtgaaggctttcattgaaaagtgtcttgcaaaaccaagggacagaccttctgctga |
45873638 |
T |
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| Q |
205 |
ggatttgctaaaggatcc |
222 |
Q |
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| T |
45873637 |
ggaattgctaaaggatcc |
45873620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 10082358 - 10082139
Alignment:
| Q |
5 |
gacatatactcatttggaatgttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgactt |
104 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||||| |||||| ||| |
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| T |
10082358 |
gacatatactcattcggaatgttagtactagagatggtgacacgagagattccgtatagcgaatgtgataatgttgcgaagatatacaaaaaggtgtctt |
10082259 |
T |
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| Q |
105 |
caggtgtgagaccacaatccttgaacaagattaaagatgttgaagtgaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctgcgga |
204 |
Q |
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|||| |||||||| ||||| ||||||||||| || |||| |||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| || |
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| T |
10082258 |
caggcgtgagacctcaatcgttgaacaagataaaggatgctgaagtgaaggctttcattgaaaggtgtcttgctcaaccaagggctagaccttctgctga |
10082159 |
T |
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| Q |
205 |
ggatttgctaaaggatcctt |
224 |
Q |
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| T |
10082158 |
tgaattgctaaaagatcctt |
10082139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 41244820 - 41244729
Alignment:
| Q |
5 |
gacatatactcatttggaatgttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaa |
96 |
Q |
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||||||||||||||||| |||| |||||||| ||||||||| | |||||||| |||||||| |||||||||||||| || ||||||||||| |
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| T |
41244820 |
gacatatactcatttggtatgtgtgtattagaaatggtgacattggaaattccttatagtgagtgtgacaatgttgccaaaatatacaagaa |
41244729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 41244656 - 41244624
Alignment:
| Q |
169 |
gtgtcttgctcaaccaagggctagaccttctgc |
201 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
41244656 |
gtgtcttgctcagccaagggctagaccttctgc |
41244624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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