View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9804_high_12 (Length: 235)

Name: NF9804_high_12
Description: NF9804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9804_high_12
NF9804_high_12
[»] chr4 (41 HSPs)
chr4 (20-224)||(27423218-27423422)
chr4 (20-214)||(27420404-27420598)
chr4 (66-214)||(27503964-27504112)
chr4 (20-222)||(27569991-27570193)
chr4 (20-224)||(27425808-27426012)
chr4 (66-214)||(27468277-27468425)
chr4 (66-214)||(27475529-27475677)
chr4 (55-220)||(27415652-27415817)
chr4 (66-214)||(27514933-27515081)
chr4 (49-224)||(27412689-27412864)
chr4 (66-192)||(27524566-27524692)
chr4 (29-211)||(27478836-27479018)
chr4 (68-214)||(27508896-27509042)
chr4 (21-203)||(27506695-27506877)
chr4 (55-212)||(27563298-27563455)
chr4 (29-209)||(27497277-27497457)
chr4 (20-224)||(27565891-27566095)
chr4 (55-203)||(27585719-27585867)
chr4 (20-193)||(27527157-27527326)
chr4 (29-160)||(27489965-27490096)
chr4 (29-170)||(27485937-27486078)
chr4 (68-177)||(17970343-17970452)
chr4 (55-118)||(27431194-27431257)
chr4 (26-162)||(27501319-27501455)
chr4 (55-178)||(27444780-27444903)
chr4 (20-178)||(27557485-27557643)
chr4 (26-163)||(27498417-27498554)
chr4 (29-178)||(27526098-27526247)
chr4 (66-202)||(27523365-27523501)
chr4 (66-178)||(27567297-27567409)
chr4 (66-164)||(27411456-27411554)
chr4 (66-100)||(27424578-27424612)
chr4 (66-202)||(27479943-27480079)
chr4 (66-202)||(27487025-27487161)
chr4 (65-177)||(27495577-27495689)
chr4 (66-202)||(27505664-27505800)
chr4 (73-164)||(27540056-27540147)
chr4 (73-164)||(27595434-27595525)
chr4 (68-103)||(27945687-27945722)
chr4 (66-99)||(27414369-27414402)
chr4 (116-173)||(27600645-27600702)
[»] chr5 (3 HSPs)
chr5 (30-214)||(1756707-1756891)
chr5 (33-193)||(1754697-1754857)
chr5 (23-100)||(1754305-1754382)
[»] chr3 (15 HSPs)
chr3 (20-214)||(55084782-55084976)
chr3 (68-214)||(38028716-38028862)
chr3 (20-178)||(50911855-50912013)
chr3 (68-214)||(38040031-38040177)
chr3 (69-214)||(38036743-38036888)
chr3 (50-174)||(50909986-50910110)
chr3 (20-171)||(38024868-38025019)
chr3 (20-171)||(38031320-38031471)
chr3 (50-177)||(50904779-50904906)
chr3 (50-178)||(38043929-38044057)
chr3 (69-178)||(48840698-48840806)
chr3 (68-126)||(38033817-38033875)
chr3 (65-153)||(55088062-55088150)
chr3 (83-174)||(50906815-50906906)
chr3 (65-201)||(50913537-50913673)
[»] chr8 (3 HSPs)
chr8 (20-178)||(21607282-21607440)
chr8 (68-214)||(21604704-21604850)
chr8 (84-178)||(21634603-21634697)
[»] chr2 (1 HSPs)
chr2 (68-177)||(3073613-3073722)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 27423218 - 27423422
Alignment:
Q  20 cttgctgtatatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaag 119  Q
    |||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27423218 cttgctgtatatgttggatagaaacagacacggcatgtgatccgcatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaag 27423317  T
Q  120 agtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttctcacttgaatggactatgaatcaaaca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27423318 agtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttctcacttgaatggactatgaatcaaaca 27423417  T
Q  220 ccaaa 224  Q
    |||||    
T  27423418 ccaaa 27423422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 27420404 - 27420598
Alignment:
Q  20 cttgctgtatatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaag 119  Q
    ||||| ||||||||||||||||||||||| |||||| | |||| | |||||||||||| |||||||||||||||||  ||| |||||||||  |||||||    
T  27420404 cttgcagtatatgttggagagaaacagacgcggtatttaatccccgtatcatacttgagccaaccttcatttcaaggcttgctgagtcaagttgaggaag 27420503  T
Q  120 agtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttctcacttgaatggactatgaatc 214  Q
    ||||||| ||  ||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||  ||| ||||| |||||||||    
T  27420504 agtttggatatgatcatcccatgggtggcctcaccattccttgcacggaagatgtctttcaacatataacttcttgcttcaatgggctatgaatc 27420598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 66 - 214
Target Start/End: Original strand, 27503964 - 27504112
Alignment:
Q  66 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcac 165  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||  ||||||| ||||||||||||||| ||||||||||    
T  27503964 tatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcac 27504063  T
Q  166 ggaagatgttttccaacatataacttctcacttgaatggactatgaatc 214  Q
     |||||||| |||||||| |||||||||  |||||||||||||||||||    
T  27504064 cgaagatgtcttccaacacataacttcttgcttgaatggactatgaatc 27504112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 27570193 - 27569991
Alignment:
Q  20 cttgctgtatatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaag 119  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| | |||||||||| | |||||||||||||||||| ||| |||||||||| |||||||    
T  27570193 cttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaag 27570094  T
Q  120 agtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttctcacttgaatggactatgaatcaaaca 219  Q
    |||| || ||  ||||||||||||||||||||||| |||||||||| |||||| | || ||||||||||| |||| | |||| ||  |||||||| ||||    
T  27570093 agttcggatatgatcatcccatgggtggcctcaccattccttgcaccgaagatatctttcaacatataacatctcgcatgaacgggatatgaatctaaca 27569994  T
Q  220 cca 222  Q
    |||    
T  27569993 cca 27569991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 27425808 - 27426012
Alignment:
Q  20 cttgctgtatatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaag 119  Q
    ||||| |||||||||||||||||||| |  |||||||||||||  |||||||||||||||||||| ||||||||||| || |||||||||   |||||||    
T  27425808 cttgcagtatatgttggagagaaacaaaagcggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaag 27425907  T
Q  120 agtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttctcacttgaatggactatgaatcaaaca 219  Q
    ||||||| ||  ||||||||||||||||||||||| |||||||||| || ||||| || |||||||| || |||| ||||||||| |||||||||  |||    
T  27425908 agtttggatatgatcatcccatgggtggcctcaccattccttgcaccgaggatgtatttcaacatatgacatctcgcttgaatggcctatgaatctgaca 27426007  T
Q  220 ccaaa 224  Q
    |||||    
T  27426008 ccaaa 27426012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 66 - 214
Target Start/End: Complemental strand, 27468425 - 27468277
Alignment:
Q  66 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcac 165  Q
    |||||||||| |||||||||||||||||||| |||||||||||| |||||||||| ||||| ||  ||||||||||||||||||||||| ||||||||||    
T  27468425 tatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgcac 27468326  T
Q  166 ggaagatgttttccaacatataacttctcacttgaatggactatgaatc 214  Q
    ||||||||| ||||||||||||| ||||  |||||||||||||||||||    
T  27468325 ggaagatgtcttccaacatataatttcttccttgaatggactatgaatc 27468277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 66 - 214
Target Start/End: Complemental strand, 27475677 - 27475529
Alignment:
Q  66 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcac 165  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| |||||||| |    
T  27475677 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgctc 27475578  T
Q  166 ggaagatgttttccaacatataacttctcacttgaatggactatgaatc 214  Q
     |||||||| ||||||||||||||||||  ||||||||| |||||||||    
T  27475577 cgaagatgtcttccaacatataacttcttgcttgaatgggctatgaatc 27475529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 27415652 - 27415817
Alignment:
Q  55 tgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcacc 154  Q
    |||||||| ||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||||| ||  ||||| |||||||||||||||||    
T  27415652 tgtgatccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcctcacc 27415751  T
Q  155 gttccttgcacggaagatgttttccaacatataacttctcacttgaatggactatgaatcaaacac 220  Q
     |||||||||| |||||||| || ||||| ||||| |||| |||||| ||| |||||||| |||||    
T  27415752 attccttgcacagaagatgtctttcaacacataacatctcgcttgaacggaatatgaatctaacac 27415817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 66 - 214
Target Start/End: Original strand, 27514933 - 27515081
Alignment:
Q  66 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcac 165  Q
    ||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| ||||| ||  ||||||||||||||||||||||| ||||||| ||    
T  27514933 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgtac 27515032  T
Q  166 ggaagatgttttccaacatataacttctcacttgaatggactatgaatc 214  Q
     |||||||| ||||| ||||||| ||||  |||||||||||||||||||    
T  27515033 agaagatgtcttccagcatataatttcttccttgaatggactatgaatc 27515081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 49 - 224
Target Start/End: Original strand, 27412689 - 27412864
Alignment:
Q  49 acggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggc 148  Q
    ||||| ||||||||  |||||||||||||||||||| | ||||||||| || ||||||||||| || ||||||||||| ||  ||||||| |||||||||    
T  27412689 acggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggc 27412788  T
Q  149 ctcaccgttccttgcacggaagatgttttccaacatataacttctcacttgaatggactatgaatcaaacaccaaa 224  Q
    |||||| ||||||||||||||||||| || ||||||||||| |||| || |||||| |||||||||  ||||||||    
T  27412789 ctcaccattccttgcacggaagatgtctttcaacatataacatctcgctcgaatgggctatgaatctgacaccaaa 27412864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 27524566 - 27524692
Alignment:
Q  66 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcac 165  Q
    ||||||| ||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||  ||||||| ||||||||||||||| |||| |||||    
T  27524566 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccgtgcac 27524665  T
Q  166 ggaagatgttttccaacatataacttc 192  Q
     |||||||| |||||||||||||||||    
T  27524666 cgaagatgtcttccaacatataacttc 27524692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 211
Target Start/End: Complemental strand, 27479018 - 27478836
Alignment:
Q  29 tatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggtt 128  Q
    |||||||||||||||||||  |||| |||  |||  |||||||||||||||||||| |  |||||||||||| |   |||||| || ||||| ||||| |    
T  27479018 tatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggat 27478919  T
Q  129 acaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttctcacttgaatggactatga 211  Q
    |  ||||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||||||  ||||||||| ||||||    
T  27478918 atgatcatcccatgggtggcctcaccattccttgctccgaagatgtgttccaacatataacttcttgcttgaatgggctatga 27478836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 27508896 - 27509042
Alignment:
Q  68 tcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcacgg 167  Q
    ||||| ||||||||||||||||||||||| ||||||| ||| || |||||||||||||| ||  ||||||| | ||||||||||||| |||| ||| | |    
T  27508896 tcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccattccatgctccg 27508995  T
Q  168 aagatgttttccaacatataacttctcacttgaatggactatgaatc 214  Q
    ||||||| ||||||||||||||||||  ||| |||||||||||||||    
T  27508996 aagatgtgttccaacatataacttcttgcttcaatggactatgaatc 27509042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 27506695 - 27506877
Alignment:
Q  21 ttgctgtatatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaaga 120  Q
    |||| |||||||| |||||||||||||| |||| ||||||||  ||||||||||| |||||||| |  |||||||||||| |   |||||| || |||||    
T  27506695 ttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaaga 27506794  T
Q  121 gtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttctcacttgaatg 203  Q
     ||||| ||  |||||||||||||||| |||||| |||||||||| |||||||| || ||||| |||||||||  ||||||||    
T  27506795 atttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttcttgcttgaatg 27506877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 27563455 - 27563298
Alignment:
Q  55 tgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcacc 154  Q
    |||||||| | ||||||||||||||||| | |  |||||||| ||| ||||||||||||| ||||||||||| ||  ||||||| ||||||||||||||     
T  27563455 tgtgatccccgtatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcaca 27563356  T
Q  155 gttccttgcacggaagatgttttccaacatataacttctcacttgaatggactatgaa 212  Q
     |||||||||| |||||||  || |||||||||||||||| ||||||||  |||||||    
T  27563355 attccttgcactgaagatgcctttcaacatataacttctcgcttgaatgagctatgaa 27563298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 209
Target Start/End: Complemental strand, 27497457 - 27497277
Alignment:
Q  29 tatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggtt 128  Q
    ||||||||||| ||||| |  |||| ||||||||  || |||||||| |||||||| |  |||||| | |||||||||||||| |||||||||||||| |    
T  27497457 tatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgttgagtcaagctgaggaagagtttggat 27497358  T
Q  129 acaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttctcacttgaatggactat 209  Q
    |  |||||||||  |||||||||||| |||||||||| ||| |||| |||||||  |||||||||| ||||||||| ||||    
T  27497357 atgatcatcccacaggtggcctcaccattccttgcactgaaaatgtcttccaacgcataacttctcgcttgaatgggctat 27497277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 27566095 - 27565891
Alignment:
Q  20 cttgctgtatatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaag 119  Q
    ||||| || ||||||||||||||||| |  || | |||||||| |||||||||| |||||||||| |  |||||||| ||| |||  ||||  |||||||    
T  27566095 cttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccattgtttcaagacttgctgatacaagttgaggaag 27565996  T
Q  120 agtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttctcacttgaatggactatgaatcaaaca 219  Q
    ||  ||| ||  ||||||| ||||||||||||||| |||||||    |||||||| ||||||||||||||||||  ||||||||||||||||| | ||||    
T  27565995 agcatggatatgatcatccaatgggtggcctcaccattccttgtggcgaagatgtcttccaacatataacttcttgcttgaatggactatgaacctaaca 27565896  T
Q  220 ccaaa 224  Q
    |||||    
T  27565895 ccaaa 27565891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 203
Target Start/End: Original strand, 27585719 - 27585867
Alignment:
Q  55 tgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcacc 154  Q
    |||||||| | ||||||||||||||||||| |  |||||||| ||| ||||||||||||| ||||||||||| ||  ||||||| ||||| || ||||||    
T  27585719 tgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcacc 27585818  T
Q  155 gttccttgcacggaagatgttttccaacatataacttctcacttgaatg 203  Q
     |||||||||| |||||||  ||| |||||||||||| || ||||||||    
T  27585819 attccttgcacagaagatgccttcaaacatataacttatcgcttgaatg 27585867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 27527157 - 27527326
Alignment:
Q  20 cttgctgtatatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaag 119  Q
    ||||| || ||||||||||| ||||||| ||||| ||||||||  |||||| |||| |||||||| || |||| ||| ||| |||||||||| |||||||    
T  27527157 cttgcggtgtatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttgctgagtcaagctgaggaag 27527256  T
Q  120 agtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttct 193  Q
    ||||||| ||  |||||||||||||     || |  |||||||||  |||||||| ||||||||||||||||||    
T  27527257 agtttggatatgatcatcccatggg----atcccaattccttgcagtgaagatgtcttccaacatataacttct 27527326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 27489965 - 27490096
Alignment:
Q  29 tatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggtt 128  Q
    ||||||||||||||||| | ||||| |||  |||   | |||||||| ||| |||| ||||||||||| ||||||| ||||||||||||||||||||| |    
T  27489965 tatgttggagagaaacaaaaacggtttgtagtccctgtgtcatacttaaacaaaccatcatttcaagatttgttgaatcaagccgaggaagagtttggat 27490064  T
Q  129 acaatcatcccatgggtggcctcaccgttcct 160  Q
    |  ||||||| ||||||||||||||| |||||    
T  27490065 atgatcatccaatgggtggcctcaccattcct 27490096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 27486078 - 27485937
Alignment:
Q  29 tatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggtt 128  Q
    |||||||||||||||||||  |||| |||  |||  |||||||||||||||||||| |  |||||||||||| |   |||||| || ||||| ||||| |    
T  27486078 tatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggat 27485979  T
Q  129 acaatcatcccatgggtggcctcaccgttccttgcacggaag 170  Q
    |  ||||||||||||||||||||||| |||||||||| ||||    
T  27485978 atgatcatcccatgggtggcctcaccattccttgcactgaag 27485937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 17970343 - 17970452
Alignment:
Q  68 tcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcacgg 167  Q
    ||||||||||||||| ||||||||||| | ||| ||||||  || |||||||| || || ||| ||||||| ||||||||||||||  |||||||||| |    
T  17970343 tcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacag 17970442  T
Q  168 aagatgtttt 177  Q
    ||||||||||    
T  17970443 aagatgtttt 17970452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 27431257 - 27431194
Alignment:
Q  55 tgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaa 118  Q
    ||||||||  |||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  27431257 tgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaa 27431194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 27501319 - 27501455
Alignment:
Q  26 gtatatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttg 125  Q
    ||||||||||||||| ||  || ||||| ||||||||  ||||||||||| |||||||| |  |||||||| |||||||  |||||||||||| | ||||    
T  27501319 gtatatgttggagaggaaatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttg 27501418  T
Q  126 gttacaatcatcccatgggtggcctcaccgttccttg 162  Q
      ||| ||||||| | |||||| |||||  |||||||    
T  27501419 aatacgatcatccaacgggtggtctcactattccttg 27501455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 178
Target Start/End: Complemental strand, 27444903 - 27444780
Alignment:
Q  55 tgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcacc 154  Q
    ||||||||  ||||||||||||| |||| | |||||||||||||| |||| ||||||||||||| | || || ||  | ||||| |||||||| |||||     
T  27444903 tgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcaca 27444804  T
Q  155 gttccttgcacggaagatgttttc 178  Q
     |||||||||  ||||| ||||||    
T  27444803 attccttgcagagaagacgttttc 27444780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 27557485 - 27557643
Alignment:
Q  20 cttgctgtatatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaag 119  Q
    ||||| ||||||||||||||| ||  ||   ||| ||||||||  || |||||||| |||||||| ||||||||||||||| ||| |||||| ||||||     
T  27557485 cttgccgtatatgttggagaggaaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaac 27557584  T
Q  120 agtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttc 178  Q
    | ||||  ||   |||||| |||||||| |||||  |||| ||||  ||||||||||||    
T  27557585 aatttgaatatgttcatccaatgggtggtctcactattccatgcagagaagatgttttc 27557643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 27498417 - 27498554
Alignment:
Q  26 gtatatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttg 125  Q
    ||||||||||||||| ||  || ||| | ||||||||  |||||||||||||||||||| || || ||||| |||||||  |||||||||||| | || |    
T  27498417 gtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaaccaagccgaggaacaattcg 27498516  T
Q  126 gttacaatcatcccatgggtggcctcaccgttccttgc 163  Q
      ||  ||||||| |||||||| |||||  ||||||||    
T  27498517 aatatgatcatccaatgggtggtctcactattccttgc 27498554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 178
Target Start/End: Complemental strand, 27526247 - 27526098
Alignment:
Q  29 tatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggtt 128  Q
    |||||||||||||||  ||  |||| |||||| |   ||||||||||||||||| | ||||| |||||||||||||| ||||| |||||| | ||||  |    
T  27526247 tatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagccaagctgaggaacaatttgaat 27526148  T
Q  129 acaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttc 178  Q
    |  ||||||| | |||||| |||||  |||||||||  ||||| ||||||    
T  27526147 atgatcatccaacgggtggtctcactattccttgcagagaagacgttttc 27526098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 202
Target Start/End: Complemental strand, 27523501 - 27523365
Alignment:
Q  66 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcac 165  Q
    ||||||| ||||||||| ||||||| ||||||||||||||  ||||||||||| | ||||  ||  | ||||| |||||||| || ||  |||||||||     
T  27523501 tatcatatttgaaccaaacttcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaa 27523402  T
Q  166 ggaagatgttttccaacatataacttctcacttgaat 202  Q
     |||||  |||||  | |||| |||||||||||||||    
T  27523401 agaagacattttcttagatattacttctcacttgaat 27523365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 27567297 - 27567409
Alignment:
Q  66 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcac 165  Q
    ||||||||||||||||||| || |||||||||||  | | |||| | || ||||| ||||||||  ||||||| |||||||| |||||  |||||||||     
T  27567297 tatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaatttggttatgatcatccaatgggtggtctcacaattccttgcag 27567396  T
Q  166 ggaagatgttttc 178  Q
     ||||||| ||||    
T  27567397 cgaagatgctttc 27567409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 27411554 - 27411456
Alignment:
Q  66 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgca 164  Q
    ||||||||||||||||||| || |||||||||||  | | |||||| || ||||| ||||| ||  ||||||| |||||||| |||||  |||||||||    
T  27411554 tatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgca 27411456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 27424612 - 27424578
Alignment:
Q  66 tatcatacttgaaccaaccttcatttcaagaattg 100  Q
    |||||||||||||||||||||||||||||||||||    
T  27424612 tatcatacttgaaccaaccttcatttcaagaattg 27424578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 202
Target Start/End: Original strand, 27479943 - 27480079
Alignment:
Q  66 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcac 165  Q
    ||||||||||||||||| | ||||| ||| | |||||||  ||||| |||||| | ||||  ||  ||||||| |||||||| |||||| |||||||||     
T  27479943 tatcatacttgaaccaaacatcattccaaaagttgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcag 27480042  T
Q  166 ggaagatgttttccaacatataacttctcacttgaat 202  Q
     |||||  |||||  | |||| | |||||||||||||    
T  27480043 agaagacattttcttagatattaattctcacttgaat 27480079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 202
Target Start/End: Original strand, 27487025 - 27487161
Alignment:
Q  66 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcac 165  Q
    |||||||||| |||||||| || ||||||||||||||||  ||||| || ||| | ||||  ||  ||||||| |||||||| || ||  |||||||||     
T  27487025 tatcatacttaaaccaaccatcgtttcaagaattgttgaaccaagctgaagaacaatttgaatatgatcatccaatgggtggtcttactattccttgcaa 27487124  T
Q  166 ggaagatgttttccaacatataacttctcacttgaat 202  Q
     |||||  |||||  | |||| |||||||||||||||    
T  27487125 agaagacattttcttagatattacttctcacttgaat 27487161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 177
Target Start/End: Original strand, 27495577 - 27495689
Alignment:
Q  65 atatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgca 164  Q
    |||||||||||| | |||||| | |||||| ||||| |  || |||| || ||||||||||| |  |||||||| |||||||| |||||| |||||||||    
T  27495577 atatcatacttgcatcaacctgcttttcaacaattgctaggtaaagctgaagaagagtttggatttaatcatccaatgggtggtctcaccattccttgca 27495676  T
Q  165 cggaagatgtttt 177  Q
      |||||| ||||    
T  27495677 gagaagatatttt 27495689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 202
Target Start/End: Complemental strand, 27505800 - 27505664
Alignment:
Q  66 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcac 165  Q
    ||||||||||||||||| | ||||| |||||||||||||  ||||| |||||| | ||||  ||  | ||||| |||||||| |||||  |||||||||     
T  27505800 tatcatacttgaaccaaacctcattccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgcag 27505701  T
Q  166 ggaagatgttttccaacatataacttctcacttgaat 202  Q
     |||||  |||||  | |||| | |||||||||||||    
T  27505700 agaagagattttcttagatatcatttctcacttgaat 27505664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 27540056 - 27540147
Alignment:
Q  73 cttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgca 164  Q
    |||||| ||||||||||||||||| ||| | ||  | || |||||||| ||||| ||| ||||||| |||||||| || ||| |||||||||    
T  27540056 cttgaatcaaccttcatttcaagacttgctaagcaaggcagaggaagaatttgggtaccatcatccaatgggtggactaaccattccttgca 27540147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 27595434 - 27595525
Alignment:
Q  73 cttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgca 164  Q
    |||||||| ||| | ||||||||||||  | |||||||| ||  |||||||||| | |||||||||||||||||| || ||  |||||||||    
T  27595434 cttgaaccgaccattatttcaagaattactaagtcaagcagaaaaagagtttggattcaatcatcccatgggtggtcttacaattccttgca 27595525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 27945687 - 27945722
Alignment:
Q  68 tcatacttgaaccaaccttcatttcaagaattgttg 103  Q
    ||||||||||||||||||||||||||||| ||||||    
T  27945687 tcatacttgaaccaaccttcatttcaagacttgttg 27945722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 27414402 - 27414369
Alignment:
Q  66 tatcatacttgaaccaaccttcatttcaagaatt 99  Q
    ||||||||||||||||||| ||||||||||||||    
T  27414402 tatcatacttgaaccaaccctcatttcaagaatt 27414369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 27600645 - 27600702
Alignment:
Q  116 gaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatg 173  Q
    ||||| ||||||||||||||||| |||||||| |||||  |||||||||  |||||||    
T  27600645 gaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatg 27600702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 1756891 - 1756707
Alignment:
Q  30 atgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggtta 129  Q
    ||||||||||||||||||  |||| ||||||||  |||||||||||||||||||| || |||||| | |||||||||||||| || ||||| ||||| ||    
T  1756891 atgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtcaagctgaagaagaatttggata 1756792  T
Q  130 caatcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttctcacttgaatggactatgaatc 214  Q
      |||| |||||||||||||||||| |||||||||| |||||||  ||||||||||| || |||  ||||||||| |||||||||    
T  1756791 tgatcaccccatgggtggcctcaccattccttgcaccgaagatgccttccaacatattacctcttgcttgaatgggctatgaatc 1756707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 1754697 - 1754857
Alignment:
Q  33 ttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaa 132  Q
    ||||||||||||||| |||| |||||||||  |||||||||||||| ||||| || ||||||   |||||||||||||| | |||||||||||| ||  |    
T  1754697 ttggagagaaacagaaacggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgcggaagagtttggatatga 1754796  T
Q  133 tcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttct 193  Q
    |||||| ||||||||||||||| ||| |||||| |||||||| ||| || |||||||||||    
T  1754797 tcatccaatgggtggcctcaccattctttgcacagaagatgtcttcgaaaatataacttct 1754857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 1754382 - 1754305
Alignment:
Q  23 gctgtatatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattg 100  Q
    |||||||||||||||||  ||  ||  |||| |||||||| | ||||||||||||||||| | ||||||||| |||||    
T  1754382 gctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattg 1754305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 55084782 - 55084976
Alignment:
Q  20 cttgctgtatatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaag 119  Q
    ||||| || |||||||||||||||  ||  |||| ||||||||  || || |||||||||||||| ||||||||||| ||||||||||  || |||||||    
T  55084782 cttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtcgggcggaggaag 55084881  T
Q  120 agtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttctcacttgaatggactatgaatc 214  Q
    | ||||| ||| ||||||| ||||||||||||||  |||||||||| ||||||||||||   ||||| ||||||| ||| |||| ||||| ||||    
T  55084882 aatttggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgttttctttcatattacttctcgcttcaatgaactataaatc 55084976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 38028862 - 38028716
Alignment:
Q  68 tcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcacgg 167  Q
    ||||||||||||||| ||||||||||| |  |||||||||||||||||||||| ||||| ||  | ||||| ||||| ||||||||  |||||||||| |    
T  38028862 tcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgcacag 38028763  T
Q  168 aagatgttttccaacatataacttctcacttgaatggactatgaatc 214  Q
    |||| ||||||   ||||| ||||||||||| ||||| |||| ||||    
T  38028762 aagacgttttcttgcatattacttctcacttcaatgggctataaatc 38028716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 50912013 - 50911855
Alignment:
Q  20 cttgctgtatatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaag 119  Q
    ||||| |||||||||||||| ||   || ||||| |||||||| ||  ||||||||||||||| ||||||||||| | |||||||||||||| |||||||    
T  50912013 cttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagcagaggaag 50911914  T
Q  120 agtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttc 178  Q
    | ||||| ||  |||| || ||||||||||| ||  |||||||||| |||| |||||||    
T  50911913 aatttggatatgatcacccaatgggtggcctaacaattccttgcacagaaggtgttttc 50911855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 38040177 - 38040031
Alignment:
Q  68 tcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcacgg 167  Q
    ||||||||||||||| ||||||||||| |  |||||||||||||||||||||| || || ||  | ||||| ||||| ||||||||  |||||||||| |    
T  38040177 tcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacag 38040078  T
Q  168 aagatgttttccaacatataacttctcacttgaatggactatgaatc 214  Q
    |||| ||||||   ||||| ||||||||||| ||||| |||| ||||    
T  38040077 aagacgttttcttgcatattacttctcacttcaatgggctataaatc 38040031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 214
Target Start/End: Complemental strand, 38036888 - 38036743
Alignment:
Q  69 catacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcacgga 168  Q
    |||||||||||||| ||||||||||| | ||||||||||||||||||||||| || || ||  | ||||| ||||| ||||||||  |||||||||| ||    
T  38036888 catacttgaaccaagcttcatttcaaaatttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacaga 38036789  T
Q  169 agatgttttccaacatataacttctcacttgaatggactatgaatc 214  Q
    | | ||||||   ||||| ||||||||||| ||||| |||| ||||    
T  38036788 atacgttttcttgcatattacttctcacttcaatgggctataaatc 38036743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 174
Target Start/End: Original strand, 50909986 - 50910110
Alignment:
Q  50 cggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcc 149  Q
    |||| ||| |||| ||| ||||||||||||||| ||||||||||| | ||||||| |||||  |||||||| ||||| ||  ||||||| ||||||||||    
T  50909986 cggtttgttatccccatgtcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggcc 50910085  T
Q  150 tcaccgttccttgcacggaagatgt 174  Q
    ||||  |||||||||| ||||||||    
T  50910086 tcacaattccttgcacagaagatgt 50910110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 38025019 - 38024868
Alignment:
Q  20 cttgctgtatatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaag 119  Q
    ||||| ||||||||||||||| ||  ||  |||| ||| |||| ||| ||||||||||||||| |||| |||||| | || ||||||||||| |||||||    
T  38025019 cttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaag 38024920  T
Q  120 agtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaaga 171  Q
    | ||||| ||  |||| || ||||||||||||||  |||||||||| |||||    
T  38024919 aatttggatatgatcacccaatgggtggcctcacgattccttgcacagaaga 38024868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 38031471 - 38031320
Alignment:
Q  20 cttgctgtatatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaag 119  Q
    ||||| ||||||||||||||| ||  ||  |||| ||| |||| ||| ||||||||||||||| |||| |||||| | || ||||||||||| |||||||    
T  38031471 cttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaag 38031372  T
Q  120 agtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaaga 171  Q
    | ||||| ||  |||| || ||||||||||||||  |||||||||| |||||    
T  38031371 aatttggatatgatcacccaatgggtggcctcacgattccttgcacagaaga 38031320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 177
Target Start/End: Complemental strand, 50904906 - 50904779
Alignment:
Q  50 cggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcc 149  Q
    |||| ||||||||| || || |||||||||||| ||||||||||||| |||||||||| ||| ||||| || || || ||  ||||||| ||||||||||    
T  50904906 cggtttgtgatccatatgtcctacttgaaccaaacttcatttcaagacttgttgagtcgagcagaggatgaattcggatatgatcatccaatgggtggcc 50904807  T
Q  150 tcaccgttccttgcacggaagatgtttt 177  Q
    ||||| |||||||||  ||||| |||||    
T  50904806 tcaccattccttgcagagaagaggtttt 50904779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 178
Target Start/End: Original strand, 38043929 - 38044057
Alignment:
Q  50 cggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcc 149  Q
    |||| ||||||||  || ||||||||||| ||| |||| |||||||| ||| |||||||||| |||||||| ||||| ||  ||||||| ||||| ||||    
T  38043929 cggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcggcc 38044028  T
Q  150 tcaccgttccttgcacggaagatgttttc 178  Q
    ||||  |||||||||| |||| |||||||    
T  38044029 tcacaattccttgcaccgaaggtgttttc 38044057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 48840806 - 48840698
Alignment:
Q  69 catacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcacgga 168  Q
    |||||||||||||| | ||||||||||| ||||||||| |||  ||| |||| ||||| ||  ||||||| ||||||||||||||  |||||||||| ||    
T  48840806 catacttgaaccaagcctcatttcaagacttgttgagt-aagtggagaaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacaga 48840708  T
Q  169 agatgttttc 178  Q
    ||||||||||    
T  48840707 agatgttttc 48840698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 38033875 - 38033817
Alignment:
Q  68 tcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttgg 126  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||||||||||| |||||    
T  38033875 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaatttgg 38033817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 153
Target Start/End: Complemental strand, 55088150 - 55088062
Alignment:
Q  65 atatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcac 153  Q
    ||||| ||||| ||||| ||||||||||  || ||||| | || ||| |||||||||||||||| ||||||||| |||||||| |||||    
T  55088150 atatcttacttaaaccacccttcatttcttgatttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggtggtctcac 55088062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 50906906 - 50906815
Alignment:
Q  83 ccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgt 174  Q
    ||||||||||||||||||||| |||||||||| || || ||  |||||  |||||| |||||||| || ||  |||| |||| |||||||||    
T  50906906 ccttcatttcaagaattgttgcgtcaagccgaagaggaattccgttactgtcatccaatgggtggtcttacaattccgtgcaaggaagatgt 50906815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 201
Target Start/End: Original strand, 50913537 - 50913673
Alignment:
Q  65 atatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgca 164  Q
    ||||||| ||||||  | |||| ||||||||||||| | || ||||| || || || ||||| |||  |||||| |||||||| || ||  |||| ||||    
T  50913537 atatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaatttggctactgtcatccaatgggtggtcttacaattccctgca 50913636  T
Q  165 cggaagatgttttccaacatataacttctcacttgaa 201  Q
     ||||||||| |||  ||||| | |||||||||||||    
T  50913637 aggaagatgtcttcttacatacagcttctcacttgaa 50913673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 21607440 - 21607282
Alignment:
Q  20 cttgctgtatatgttggagagaaacagacacggtatgtgatccacatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaag 119  Q
    ||||| ||||||||||||||| ||  ||  |||| ||| |||| ||| ||||||||||||| | |||| |||||| | || ||||||||||| |||||||    
T  21607440 cttgcggtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccgagcttcctttcaaaacttattgagtcaagcagaggaag 21607341  T
Q  120 agtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttc 178  Q
    | ||||| ||  |||| || |||||||||||||| ||||||||||| |||||| |||||    
T  21607340 aatttggatatgatcacccaatgggtggcctcacggttccttgcacagaagatattttc 21607282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 21604850 - 21604704
Alignment:
Q  68 tcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcacgg 167  Q
    ||||||||||||||| ||||||||||| |  |||||||||||| ||||||||| || || ||  | ||||| ||||| ||||||||  |||||||||| |    
T  21604850 tcatacttgaaccaagcttcatttcaaaacatgttgagtcaagacgaggaagaattaggatatgaccatccaatgggcggcctcacaattccttgcacag 21604751  T
Q  168 aagatgttttccaacatataacttctcacttgaatggactatgaatc 214  Q
    |||| ||||||   ||||| ||||||||||| ||||| |||| ||||    
T  21604750 aagacgttttcttgcatattacttctcacttcaatgggctataaatc 21604704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 21634603 - 21634697
Alignment:
Q  84 cttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttc 178  Q
    |||| |||||||| ||| |||||||||| |||||||| ||||| ||  ||||||  ||||| ||| ||||  |||||||||| ||||||||||||    
T  21634603 cttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgcaccgaagatgttttc 21634697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 3073613 - 3073722
Alignment:
Q  68 tcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcacgg 167  Q
    ||||||||||||||| ||||||||||| | ||| ||||||  || |||||||| || || ||| ||||||| ||||||||||||||  |||||||||| |    
T  3073613 tcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacag 3073712  T
Q  168 aagatgtttt 177  Q
    ||||||||||    
T  3073713 aagatgtttt 3073722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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