View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9804_high_13 (Length: 227)
Name: NF9804_high_13
Description: NF9804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9804_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 21243168 - 21242960
Alignment:
| Q |
1 |
ctcttcagagaagaaacatcatatttcccaaccacactttgtttcgctaaagcaagaatcatcggtggcacaacccacaagttcgtcactttatacttct |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21243168 |
ctcttcaaagaagaaacatcatatttcccaaccacactctgtttcgctaaagcaagaatcatcggtggcacaacccacaagttcgtcactttatacttct |
21243069 |
T |
|
| Q |
101 |
caatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgccaatccaaacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21243068 |
caatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgccaatccaaacac |
21242969 |
T |
|
| Q |
201 |
atgaaacat |
209 |
Q |
| |
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||||||||| |
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| T |
21242968 |
atgaaacat |
21242960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 21258933 - 21258726
Alignment:
| Q |
1 |
ctcttcagagaagaaacatcatatttcccaaccacactttgtttcgctaaagcaagaatcatcggtggcacaacccacaagttcgtcactttatacttct |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| ||||||||||||||| | |||||| ||||||| | |
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| T |
21258933 |
ctcttcaacgaagaaacatcatatttcccaaccacactctgtttcgccaaagcaagattcatcgatggcacaacccacaaagttgtcactctatactttt |
21258834 |
T |
|
| Q |
101 |
caatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgccaatccaaacac |
200 |
Q |
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|||||||||||| |||||||||||||||||| |||||| | |||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
21258833 |
caatcaccttca-aaaaccctctaactcaaatctccccgttgaaaccaccgcacttcctctccttagctgcgcgtatgttataaccgccaatctaaacac |
21258735 |
T |
|
| Q |
201 |
atgaaacat |
209 |
Q |
| |
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||||||||| |
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| T |
21258734 |
atgaaacat |
21258726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 21254357 - 21254227
Alignment:
| Q |
74 |
cccacaagttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgc |
173 |
Q |
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||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||| || |
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| T |
21254357 |
cccacaaattcgtcactctatgcttctcaatcaccttcaaaaa-ccctctaactcaaacctccccgttgaaaccaccgtacttcctctccttagctgcgc |
21254259 |
T |
|
| Q |
174 |
gtatgttataaccgccaatccaaacacatgaa |
205 |
Q |
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||||||||||||| |||||| ||||||||||| |
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|
| T |
21254258 |
gtatgttataaccaccaatctaaacacatgaa |
21254227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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