View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9804_high_6 (Length: 362)

Name: NF9804_high_6
Description: NF9804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9804_high_6
NF9804_high_6
[»] chr5 (2 HSPs)
chr5 (1-362)||(1756495-1756856)
chr5 (218-362)||(1754729-1754873)
[»] chr4 (50 HSPs)
chr4 (166-361)||(27475482-27475677)
chr4 (166-361)||(27468230-27468425)
chr4 (166-362)||(27478786-27478982)
chr4 (206-361)||(27503964-27504119)
chr4 (166-361)||(27514933-27515128)
chr4 (212-362)||(27412705-27412855)
chr4 (212-362)||(27415662-27415812)
chr4 (165-361)||(27524566-27524761)
chr4 (212-362)||(27425853-27426003)
chr4 (212-361)||(27420450-27420599)
chr4 (215-361)||(27563298-27563444)
chr4 (192-362)||(27506739-27506909)
chr4 (218-359)||(27497277-27497418)
chr4 (206-359)||(27508896-27509049)
chr4 (212-361)||(27569998-27570147)
chr4 (224-361)||(27585730-27585867)
chr4 (138-362)||(27527202-27527429)
chr4 (213-362)||(27423263-27423412)
chr4 (215-362)||(27565903-27566050)
chr4 (257-362)||(27485937-27486042)
chr4 (254-361)||(27411447-27411554)
chr4 (246-359)||(27490004-27490117)
chr4 (253-361)||(27567297-27567405)
chr4 (1-100)||(27522047-27522145)
chr4 (263-361)||(27487025-27487123)
chr4 (263-361)||(27479943-27480041)
chr4 (264-362)||(27498456-27498554)
chr4 (254-359)||(17970343-17970448)
chr4 (254-361)||(27424505-27424612)
chr4 (1-100)||(27509440-27509538)
chr4 (263-362)||(27513776-27513875)
chr4 (263-362)||(27431148-27431247)
chr4 (263-361)||(27526112-27526210)
chr4 (265-362)||(27501358-27501455)
chr4 (254-359)||(27557533-27557638)
chr4 (264-361)||(27571665-27571762)
chr4 (254-361)||(27414295-27414402)
chr4 (263-362)||(27444794-27444893)
chr4 (263-362)||(27495577-27495676)
chr4 (265-348)||(27554364-27554447)
chr4 (263-361)||(27505702-27505800)
chr4 (264-361)||(27419072-27419169)
chr4 (253-314)||(27559230-27559291)
chr4 (253-321)||(27556369-27556437)
chr4 (263-362)||(27469501-27469600)
chr4 (1-100)||(27504460-27504558)
chr4 (29-100)||(27515454-27515524)
chr4 (265-359)||(27502809-27502903)
chr4 (255-317)||(27577404-27577466)
chr4 (263-307)||(27460574-27460618)
[»] chr3 (12 HSPs)
chr3 (256-359)||(38024868-38024971)
chr3 (256-359)||(38031320-38031423)
chr3 (257-359)||(50911863-50911965)
chr3 (210-359)||(50910004-50910153)
chr3 (257-359)||(38043947-38044049)
chr3 (254-356)||(55084833-55084935)
chr3 (211-359)||(38028714-38028862)
chr3 (263-356)||(50904792-50904885)
chr3 (211-359)||(38040029-38040177)
chr3 (254-358)||(48840703-48840806)
chr3 (188-358)||(38036718-38036888)
chr3 (211-359)||(38033723-38033875)
[»] chr8 (3 HSPs)
chr8 (255-359)||(21607288-21607392)
chr8 (254-341)||(21634605-21634692)
chr8 (211-359)||(21604702-21604850)
[»] chr2 (1 HSPs)
chr2 (254-359)||(3073613-3073718)


Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 1756495 - 1756856
Alignment:
Q  1 tttctgaagacataggccgagccttatcaatttggctaaatcgtcaatagttattgattccgttcaagcactttagttagcttacctggaattagcaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1756495 tttctgaagacataggccgagccttatcaatttggctaaatcgtcaatagttattgattccgttcaagcattttagttagcttacctggaattagcaaaa 1756594  T
Q  101 ataattatgctagtattccgagagacacaaatatatttttacaagttaaaaagatatgtattataaaaaatgtctaaactaatctggtctatgtcagtat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1756595 ataattatgctagtattccgagagacacaaatatatttttacaagttaaaaagatatgtattataaaaaatgtctaaactaatctggtctatgtcagtat 1756694  T
Q  201 gctacagtaaaagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1756695 gctacagtaaaagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatat 1756794  T
Q  301 ccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgatat 362  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1756795 ccaaattcttcttcagcttgactcaacaagtattgaaacgatggttggttcaagtatgatat 1756856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 218 - 362
Target Start/End: Complemental strand, 1754873 - 1754729
Alignment:
Q  218 atagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagc 317  Q
    |||||||||| |||| ||| || |||| || |||| ||||||| |||||| ||||||||||||||||||| || |||||||||||||| |||||  ||||    
T  1754873 atagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttccgcagc 1754774  T
Q  318 ttgactcaacaagtgttgaaacgatggttggttcaagtatgatat 362  Q
    |||||||||||||  ||||||||||||||| ||||||||||||||    
T  1754773 ttgactcaacaaggattgaaacgatggttgattcaagtatgatat 1754729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 166 - 361
Target Start/End: Original strand, 27475482 - 27475677
Alignment:
Q  166 aaaaatgtctaaactaatctggtctatgtcagtatgctacagtaaaagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgc 265  Q
    |||||||||| ||||||||| || |||||||||||| |||| || |||||||||||||||||||||||||| || |||||||||||| ||||||||| ||    
T  27475482 aaaaatgtctcaactaatctagtgtatgtcagtatgttacaatataagattcatagcccattcaagcaagaagttatatgttggaagacatcttcggagc 27475581  T
Q  266 aaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgata 361  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||| |||||| || ||||| |||||||||||||    
T  27475582 aaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttgattcaagtatgata 27475677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 166 - 361
Target Start/End: Original strand, 27468230 - 27468425
Alignment:
Q  166 aaaaatgtctaaactaatctggtctatgtcagtatgctacagtaaaagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgc 265  Q
    |||| ||||| || |||||| |||||||| |||||||||||||  ||||||||||| ||||||||| ||||  | |||||||||||| ||||||| ||||    
T  27468230 aaaattgtctcaattaatctagtctatgtgagtatgctacagtgtaagattcatagtccattcaaggaagaaattatatgttggaagacatcttccgtgc 27468329  T
Q  266 aaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgata 361  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| || | |||||||||||||| |||||| || |||||||| ||||||||||    
T  27468330 aaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttggtttaagtatgata 27468425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 166 - 362
Target Start/End: Original strand, 27478786 - 27478982
Alignment:
Q  166 aaaaatgtctaaactaatctggtctatgtcagtatgctacagtaaaagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgc 265  Q
    |||||||||| | ||||||| |  ||| |||||||| ||||||  |||| ||||||||||||||||||||| || |||||||||||  ||||||||| ||    
T  27478786 aaaaatgtctcagctaatctagcgtatatcagtatgttacagtgtaagaatcatagcccattcaagcaagaagttatatgttggaacacatcttcggagc 27478885  T
Q  266 aaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgatat 362  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||   | ||| | ||||||| ||||||||||||||||||||||    
T  27478886 aaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatat 27478982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 206 - 361
Target Start/End: Complemental strand, 27504119 - 27503964
Alignment:
Q  206 agtaaaagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaa 305  Q
    |||| ||||||||||| |||||||||||||| || || ||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  27504119 agtataagattcatagtccattcaagcaagaagttatgtgttggaagacatcttcggtgcaaggaatggtgaggccacccattggatgatcatatccaaa 27504020  T
Q  306 ttcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgata 361  Q
     ||||| || |||||||||||||||| |||||| || |||||||||||||||||||    
T  27504019 ctcttcctcggcttgactcaacaagtcttgaaatgaaggttggttcaagtatgata 27503964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 166 - 361
Target Start/End: Complemental strand, 27515128 - 27514933
Alignment:
Q  166 aaaaatgtctaaactaatctggtctatgtcagtatgctacagtaaaagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgc 265  Q
    |||| ||||| || |||||| |||||||| |||||||||||||  ||||||||||| ||||||||| ||||  | ||||| |||||| ||||||| || |    
T  27515128 aaaattgtctcaattaatctagtctatgtgagtatgctacagtgtaagattcatagtccattcaaggaagaaattatatgctggaagacatcttctgtac 27515029  T
Q  266 aaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgata 361  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| || | |||||||||||||| |||||| || ||||| |||||||||||||    
T  27515028 aaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttgattcaagtatgata 27514933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 212 - 362
Target Start/End: Complemental strand, 27412855 - 27412705
Alignment:
Q  212 agattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttc 311  Q
    ||||||||||||||||| ||| ||| || |||||||| ||| ||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||    
T  27412855 agattcatagcccattcgagcgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttc 27412756  T
Q  312 ttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgatat 362  Q
    ||||||||||||||| |||| ||||||  ||||||||||||||||||||||    
T  27412755 ttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatat 27412705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 212 - 362
Target Start/End: Complemental strand, 27415812 - 27415662
Alignment:
Q  212 agattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttc 311  Q
    |||||||||  || ||||||| ||| || || ||||| ||| ||||||| ||||||||||||||||||||||||||||  |||||||||||||| |||||    
T  27415812 agattcatattccgttcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccacccatggaatgatcatatccaaactcttc 27415713  T
Q  312 ttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgatat 362  Q
     ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27415712 ctcagcttgactcaacaagtcttgaaacgatggttggttcaagtatgatat 27415662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 165 - 361
Target Start/End: Complemental strand, 27524761 - 27524566
Alignment:
Q  165 aaaaaatgtctaaactaatctggtctatgtcagtatgctacagtaaaagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtg 264  Q
    ||||||||||| ||||||||| | |||| |||||||| || |||  ||| ||||  | ||||||||||| || || |||||||||||| |||||||||||    
T  27524761 aaaaaatgtctcaactaatctag-ctatttcagtatgttaaagtgtaaggttcaagggccattcaagcatgaagttatatgttggaagacatcttcggtg 27524663  T
Q  265 caaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgata 361  Q
    || |||||||||||||||||||| || |||||||||||||| ||||| ||||||||| ||||||||| |||||| || ||||||||||| |||||||    
T  27524662 cacggaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgattcaacaagtcttgaaatgaaggttggttcaaatatgata 27524566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 212 - 362
Target Start/End: Complemental strand, 27426003 - 27425853
Alignment:
Q  212 agattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttc 311  Q
    |||||||||| |||||||||| ||| || |||||||| ||  |||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  27426003 agattcataggccattcaagcgagatgtcatatgttgaaatacatcctcggtgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttc 27425904  T
Q  312 ttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgatat 362  Q
     |||  ||||||||| |||| |||||| |||||||||||||||||||||||    
T  27425903 ctcaaattgactcaataagtcttgaaatgatggttggttcaagtatgatat 27425853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 212 - 361
Target Start/End: Complemental strand, 27420599 - 27420450
Alignment:
Q  212 agattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttc 311  Q
    |||||||||||||||| |||||||| || |||||||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  27420599 agattcatagcccattgaagcaagaagttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttc 27420500  T
Q  312 ttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgata 361  Q
     ||| ||||||||| ||||  |||||| || |||||| ||||||||||||    
T  27420499 ctcaacttgactcagcaagccttgaaatgaaggttggctcaagtatgata 27420450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 215 - 361
Target Start/End: Original strand, 27563298 - 27563444
Alignment:
Q  215 ttcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttc 314  Q
    |||||||| ||||||||| ||| || |||||||| ||||||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||||||    
T  27563298 ttcatagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttc 27563397  T
Q  315 agcttgactcaacaagtgttgaaacgatggttggttcaagtatgata 361  Q
     |||||||||| ||| | ||||||| ||| |||||||||||||||||    
T  27563398 ggcttgactcagcaaatcttgaaacaatgtttggttcaagtatgata 27563444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 192 - 362
Target Start/End: Complemental strand, 27506909 - 27506739
Alignment:
Q  192 tgtcagtatgctacagtaaaagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatgggg 291  Q
    ||||||||||||| |||   ||||| || || ||||||||||||| || || ||||| ||| ||||||| ||||||||||||||||| |||||||||||     
T  27506909 tgtcagtatgctaaagtgtcagatttatggctcattcaagcaagaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatggga 27506810  T
Q  292 tgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgatat 362  Q
    ||||||||||||||||||||||| ||||||   | ||| | ||||||| |||||||||| |||||||||||    
T  27506809 tgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatat 27506739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 218 - 359
Target Start/End: Original strand, 27497277 - 27497418
Alignment:
Q  218 atagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagc 317  Q
    ||||||||||||||| ||| || ||  |||||||| ||| ||| |||||||||||||||||||||||  |||| |||||||||||||| ||||| |||||    
T  27497277 atagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatggtgaggccacctgtgggatgatcatatccaaactcttcctcagc 27497376  T
Q  318 ttgactcaacaagtgttgaaacgatggttggttcaagtatga 359  Q
    |||||||||||| | ||||||| |||||||||| ||||||||    
T  27497377 ttgactcaacaaatattgaaacaatggttggtttaagtatga 27497418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 206 - 359
Target Start/End: Complemental strand, 27509049 - 27508896
Alignment:
Q  206 agtaaaagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaa 305  Q
    |||| ||||||||||| ||||| |||||||| || |||||||||||  ||||||||| ||| |||||||||||||||||| | || ||||||||||||||    
T  27509049 agtataagattcatagtccattgaagcaagaagttatatgttggaacacatcttcggagcatggaatggtgaggccacccgttggatgatcatatccaaa 27508950  T
Q  306 ttcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatga 359  Q
     ||||| ||||| ||| ||||||||| |||||| || ||||||||||| |||||    
T  27508949 ctcttcctcagcctgattcaacaagtcttgaaatgaaggttggttcaaatatga 27508896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 212 - 361
Target Start/End: Original strand, 27569998 - 27570147
Alignment:
Q  212 agattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttc 311  Q
    ||||||||| ||| |||| || ||| || |||||||| |||  |||||||||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  27569998 agattcatatcccgttcatgcgagatgttatatgttgaaagatatcttcggtgcaaggaatggtgaggccacccatgggatgatcatatccgaactcttc 27570097  T
Q  312 ttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgata 361  Q
     ||||||||||||| ||||| |||||| || |||||| | ||||||||||    
T  27570098 ctcagcttgactcagcaagtcttgaaatgaaggttggcttaagtatgata 27570147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 224 - 361
Target Start/End: Complemental strand, 27585867 - 27585730
Alignment:
Q  224 cattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgact 323  Q
    ||||||||| | | || ||||||| |||||||||||| ||||||||||||||||| || ||||| || |||||||||||||| |||||||| ||||||||    
T  27585867 cattcaagcgataagttatatgtttgaaggcatcttctgtgcaaggaatggtgagacctcccattggatgatcatatccaaactcttcttcggcttgact 27585768  T
Q  324 caacaagtgttgaaacgatggttggttcaagtatgata 361  Q
    || ||| | ||||||| |||||||||||||||||||||    
T  27585767 catcaaatcttgaaacaatggttggttcaagtatgata 27585730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 138 - 362
Target Start/End: Complemental strand, 27527429 - 27527202
Alignment:
Q  138 tttacaagttaaaaagatatgtattataaaaaatgtctaaactaatctggtctatgtcagtatgctacagtaaaagattcatagcccattc-------aa 230  Q
    |||| |||| |||||||||  ||||||||||||||||| ||||||||| |||||||||||||| ||| |||| ||||||||||| ||||||             
T  27527429 tttataagtcaaaaagatacctattataaaaaatgtctcaactaatctagtctatgtcagtatcctagagtataagattcatagaccattcttcctggct 27527330  T
Q  231 gcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaag 330  Q
    |||||| || |||||||||||| |||||||  |||||||||| | ||     |||||||| |||||||||||||| ||||| ||||||||||||| |||     
T  27527329 gcaagaagttatatgttggaagacatcttcactgcaaggaattggga----tcccatgggatgatcatatccaaactcttcctcagcttgactcagcaac 27527234  T
Q  331 tgttgaaacgatggttggttcaagtatgatat 362  Q
    | | |||||||||||||||| |||| ||||||    
T  27527233 tctagaaacgatggttggtttaagtgtgatat 27527202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 213 - 362
Target Start/End: Complemental strand, 27423412 - 27423263
Alignment:
Q  213 gattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttct 312  Q
    ||||||||| |||||||||  ||| || |||||||||||  ||||||| |||||||||| |||||||||||||||||| ||||  || ||||| |||||     
T  27423412 gattcatagtccattcaagtgagaagttatatgttggaaaacatcttccgtgcaaggaacggtgaggccacccatgggatgattgtaaccaaactcttcc 27423313  T
Q  313 tcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgatat 362  Q
    || |||||||||||||| | |||||| || ||||||||||||||||||||    
T  27423312 tcggcttgactcaacaattcttgaaatgaaggttggttcaagtatgatat 27423263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 215 - 362
Target Start/End: Original strand, 27565903 - 27566050
Alignment:
Q  215 ttcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttc 314  Q
    ||||||| |||||||||||||| || |||||||||||| ||||||||   ||||||||||||||||||||||| || ||||||||||||   ||||| ||    
T  27565903 ttcatagtccattcaagcaagaagttatatgttggaagacatcttcgccacaaggaatggtgaggccacccattggatgatcatatccatgctcttcctc 27566002  T
Q  315 agcttgactcaacaagtgttgaaacgatggttggttcaagtatgatat 362  Q
    | ||||  ||| ||||| ||||||| |||||||||||| |||||||||    
T  27566003 aacttgtatcagcaagtcttgaaacaatggttggttcaggtatgatat 27566050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 257 - 362
Target Start/End: Original strand, 27485937 - 27486042
Alignment:
Q  257 cttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagta 356  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||   | ||| | ||||||| ||||||||||||||||    
T  27485937 cttcagtgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagta 27486036  T
Q  357 tgatat 362  Q
    ||||||    
T  27486037 tgatat 27486042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 254 - 361
Target Start/End: Original strand, 27411447 - 27411554
Alignment:
Q  254 catcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaa 353  Q
    |||| ||| |||||||||| ||||| |||||||| || ||||||||||||||||||||||| |||||| | |  || | |||||||||||||||||||||    
T  27411447 catcctcgctgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaacgatggttggttcaa 27411546  T
Q  354 gtatgata 361  Q
    ||||||||    
T  27411547 gtatgata 27411554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 246 - 359
Target Start/End: Complemental strand, 27490117 - 27490004
Alignment:
Q  246 ttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggt 345  Q
    ||||||| |||||||| ||  ||||||||||||||||||||| || |||||||||||||| ||||| || |||||| ||||||| | |||||| ||||||    
T  27490117 ttggaagtcatcttcgttgacaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgattcaacaaatcttgaaatgatggt 27490018  T
Q  346 tggttcaagtatga 359  Q
    | ||| ||||||||    
T  27490017 ttgtttaagtatga 27490004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 253 - 361
Target Start/End: Complemental strand, 27567405 - 27567297
Alignment:
Q  253 gcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttca 352  Q
    ||||||||| |||||||||| ||||| |||||||| || |||||||| |||||||||||||| | |||| | |  || | ||||||||||||||||||||    
T  27567405 gcatcttcgctgcaaggaattgtgagaccacccattggatgatcataaccaaattcttcttctgtttgatttagtaattcttgaaacgatggttggttca 27567306  T
Q  353 agtatgata 361  Q
    |||||||||    
T  27567305 agtatgata 27567297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 27522145 - 27522047
Alignment:
Q  1 tttctgaagacataggccgagccttatcaatttggctaaatcgtcaatagttattgattccgttcaagcactttagttagcttacctggaattagcaaaa 100  Q
    |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| | ||| | |||| |||||||||| ||||| ||||| ||||||    
T  27522145 tttctgaaaacataggccgagccttatcaatttggctagatcatcaatagttattgaattcgtgcgagcattttagttagc-tacctcgaatttgcaaaa 27522047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 263 - 361
Target Start/End: Complemental strand, 27487123 - 27487025
Alignment:
Q  263 tgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgata 361  Q
    |||||||||| || || |||||||| || ||||||||| |||||| ||||||||||||  ||||||| | |||||||||||||||||| ||||||||||    
T  27487123 tgcaaggaatagtaagaccacccattggatgatcatattcaaattgttcttcagcttggttcaacaattcttgaaacgatggttggtttaagtatgata 27487025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 263 - 361
Target Start/End: Complemental strand, 27480041 - 27479943
Alignment:
Q  263 tgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgata 361  Q
    |||||||||||||||| |||||||| || ||||||||| |||||| ||| ||||||||  ||||||| | ||| || |||| |||||||||||||||||    
T  27480041 tgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaacttttggaatgatgtttggttcaagtatgata 27479943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 27498554 - 27498456
Alignment:
Q  264 gcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgatat 362  Q
    ||||||||| ||||| |||||||| || ||||||||| | |||| ||| || |||||  ||||||||| ||| ||||||||||||||||||||||||||    
T  27498554 gcaaggaatagtgagaccacccattggatgatcatattcgaattgttcctcggcttggttcaacaagtcttggaacgatggttggttcaagtatgatat 27498456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 17970448 - 17970343
Alignment:
Q  254 catcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaa 353  Q
    ||||||| ||||||||||| |||||||||||||| || ||||| ||||| |||||||| || ||  |||||| ||||| |||||| || | |||||||||    
T  17970448 catcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggttcaa 17970349  T
Q  354 gtatga 359  Q
    ||||||    
T  17970348 gtatga 17970343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 254 - 361
Target Start/End: Original strand, 27424505 - 27424612
Alignment:
Q  254 catcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaa 353  Q
    |||| ||| |||| |||||||| || |||||||| || |||||||||||| |||||||||||| |||| | | ||| | |||||| || |||||||||||    
T  27424505 catcctcgctgcacggaatggtaagaccacccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaa 27424604  T
Q  354 gtatgata 361  Q
    ||||||||    
T  27424605 gtatgata 27424612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 27509538 - 27509440
Alignment:
Q  1 tttctgaagacataggccgagccttatcaatttggctaaatcgtcaatagttattgattccgttcaagcactttagttagcttacctggaattagcaaaa 100  Q
    |||||||||||||||| | |||||| | ||  |||||||||  ||||||||||||||||  ||||||| | |||||||||| ||||||||||||||||||    
T  27509538 tttctgaagacataggacaagccttgttaaactggctaaataatcaatagttattgatttagttcaagaattttagttagc-tacctggaattagcaaaa 27509440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 263 - 362
Target Start/End: Original strand, 27513776 - 27513875
Alignment:
Q  263 tgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgatat 362  Q
    |||||||||| ||||| |||||||| || ||||||||| || ||| ||||||||||||  ||||||| | ||| ||||| | ||||||||||||||||||    
T  27513776 tgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttcagcttggttcaacaattcttggaacgaggtttggttcaagtatgatat 27513875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 362
Target Start/End: Original strand, 27431148 - 27431247
Alignment:
Q  263 tgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgatat 362  Q
    |||||||||| ||||| |||||  | || || ||||||||||||| ||| || |||||| ||||||| | |||||| || ||||||||||||||||||||    
T  27431148 tgcaaggaattgtgagaccaccggttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat 27431247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 361
Target Start/End: Original strand, 27526112 - 27526210
Alignment:
Q  263 tgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgata 361  Q
    |||||||||| ||||| |||||| | || ||||||||| |||||| ||| |||||||| |||||||| | ||| || || | |||||||||||||||||    
T  27526112 tgcaaggaatagtgagaccacccgttggatgatcatattcaaattgttcctcagcttggctcaacaattcttggaatgaggtttggttcaagtatgata 27526210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 362
Target Start/End: Complemental strand, 27501455 - 27501358
Alignment:
Q  265 caaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgatat 362  Q
    |||||||| ||||| |||||| | || ||||| ||| |||||| ||| || |||||  ||||||||| ||||||| |||||||||| |||||||||||    
T  27501455 caaggaatagtgagaccacccgttggatgatcgtattcaaattgttcctcggcttggttcaacaagtcttgaaacaatggttggtttaagtatgatat 27501358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 27557638 - 27557533
Alignment:
Q  254 catcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaa 353  Q
    |||||||  |||| ||||| ||||| |||||||| || ||| ||||| |||||| ||| ||||||||| ||| ||| | |||||| ||||||||||| ||    
T  27557638 catcttctctgcatggaatagtgagaccacccattggatgaacatattcaaattgttcctcagcttgattcagcaattcttgaaatgatggttggtttaa 27557539  T
Q  354 gtatga 359  Q
    ||||||    
T  27557538 gtatga 27557533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 361
Target Start/End: Complemental strand, 27571762 - 27571665
Alignment:
Q  264 gcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgata 361  Q
    ||||||||| ||||| |||||||| || ||||||||||||||||||||||| | |||| | |  || | |||||||||||| ||| |||| |||||||    
T  27571762 gcaaggaattgtgagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgata 27571665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 361
Target Start/End: Original strand, 27414295 - 27414402
Alignment:
Q  254 catcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaa 353  Q
    |||||||  |||| ||||| || || |||||||| || ||||||||||||||||||||||| | |||| | |  || | |||||| || |||||||||||    
T  27414295 catcttcactgcacggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaatgagggttggttcaa 27414394  T
Q  354 gtatgata 361  Q
    ||||||||    
T  27414395 gtatgata 27414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 362
Target Start/End: Original strand, 27444794 - 27444893
Alignment:
Q  263 tgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgatat 362  Q
    |||||||||| ||||| |||||||| || || |||||||| |||| ||| || |||||| |||| || | |||||| |||| |||| |||||||||||||    
T  27444794 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatat 27444893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 362
Target Start/End: Complemental strand, 27495676 - 27495577
Alignment:
Q  263 tgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgatat 362  Q
    |||||||||||||||| |||||||| || |||| | ||||||| ||||||||||||| ||  | ||| |||||||| |  ||||| | ||||||||||||    
T  27495676 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgatat 27495577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 348
Target Start/End: Complemental strand, 27554447 - 27554364
Alignment:
Q  265 caaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttgg 348  Q
    |||||||| ||||| | |||| | || |||||||||||||||| ||| ||||||||| ||| ||| | ||||||||||||||||    
T  27554447 caaggaattgtgagactacccgttggatgatcatatccaaattgttcctcagcttgattcagcaattcttgaaacgatggttgg 27554364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 361
Target Start/End: Original strand, 27505702 - 27505800
Alignment:
Q  263 tgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgata 361  Q
    |||||||||| ||||| |||||||| || || |||||| |||||| ||| ||||||||  ||||||| | ||| || || | |||||||||||||||||    
T  27505702 tgcaaggaatagtgagaccacccattggatggtcatattcaaattgttcctcagcttggttcaacaattcttggaatgaggtttggttcaagtatgata 27505800  T

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Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 361
Target Start/End: Original strand, 27419072 - 27419169
Alignment:
Q  264 gcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgata 361  Q
    ||||||||| || || |||||||| || ||||||||||||||||||||||| | |||| | |  || | |||||||||||| ||| |||| |||||||    
T  27419072 gcaaggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgata 27419169  T

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Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 27559230 - 27559291
Alignment:
Q  253 gcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttc 314  Q
    ||||||||  |||||||||| ||||| |||||||| || |||||||||||||| ||||||||    
T  27559230 gcatcttcactgcaaggaattgtgagaccacccattggatgatcatatccaaactcttcttc 27559291  T

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Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 27556369 - 27556437
Alignment:
Q  253 gcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttga 321  Q
    ||||||||  |||| ||||| ||||| |||||||| |  ||||||||||||||||||||||| ||||||    
T  27556369 gcatcttcactgcatggaattgtgagaccacccatagaatgatcatatccaaattcttcttctgcttga 27556437  T

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Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 362
Target Start/End: Complemental strand, 27469600 - 27469501
Alignment:
Q  263 tgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatgatat 362  Q
    |||||||||| || || |||||||| || || |||||| |||||| |||||||||||| |||||||  | ||| || |||| ||| ||||| ||||||||    
T  27469600 tgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagttcttgtaatgatgtttgcttcaaatatgatat 27469501  T

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Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 27504558 - 27504460
Alignment:
Q  1 tttctgaagacataggccgagccttatcaatttggctaaatcgtcaatagttattgattccgttcaagcactttagttagcttacctggaattagcaaaa 100  Q
    |||||||||||||||  | |||||| | ||  |||||||||  ||| ||||||| ||||  ||||||| | |||||||||| ||||||||||||||||||    
T  27504558 tttctgaagacatagaacaagccttgttaaactggctaaataatcagtagttatcgatttagttcaagaattttagttagc-tacctggaattagcaaaa 27504460  T

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Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 27515524 - 27515454
Alignment:
Q  29 aatttggctaaatcgtcaatagttattgattccgttcaagcactttagttagcttacctggaattagcaaaa 100  Q
    |||||||||||||  ||||| ||||||||||  ||||||  ||||||||||  |||||||||||||||||||    
T  27515524 aatttggctaaattatcaatggttattgatttagttcaataactttagtta-tttacctggaattagcaaaa 27515454  T

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Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 359
Target Start/End: Original strand, 27502809 - 27502903
Alignment:
Q  265 caaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatga 359  Q
    |||||||| || || |||||||| || || |||||||||||||||||  ||||||| |||| ||||| |||||| || | ||| ||||| |||||    
T  27502809 caaggaatagtaagaccacccattggatggtcatatccaaattcttccacagcttggctcagcaagtcttgaaatgaagtttgattcaaatatga 27502903  T

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Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 27577466 - 27577404
Alignment:
Q  255 atcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagc 317  Q
    |||||| ||||| ||||| ||||| |||||||| |||||||   |||||||||||||||||||    
T  27577466 atcttcagtgcatggaattgtgagaccacccatagggtgattgaatccaaattcttcttcagc 27577404  T

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Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 27460618 - 27460574
Alignment:
Q  263 tgcaaggaatggtgaggccacccatggggtgatcatatccaaatt 307  Q
    |||||||||||||||| |||||||| || ||||||||| ||||||    
T  27460618 tgcaaggaatggtgagaccacccattggatgatcatattcaaatt 27460574  T

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Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 38024868 - 38024971
Alignment:
Q  256 tcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagt 355  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||| |||||| || | |||||||||||    
T  38024868 tcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttggttcaagt 38024967  T
Q  356 atga 359  Q
    ||||    
T  38024968 atga 38024971  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 38031320 - 38031423
Alignment:
Q  256 tcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagt 355  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||| |||||| || | |||||||||||    
T  38031320 tcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttggttcaagt 38031419  T
Q  356 atga 359  Q
    ||||    
T  38031420 atga 38031423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 257 - 359
Target Start/End: Original strand, 50911863 - 50911965
Alignment:
Q  257 cttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagta 356  Q
    |||| ||||||||||| || ||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |||||| || | ||||||||||||    
T  50911863 cttctgtgcaaggaattgttaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaacaagttttgaaatgaagcttggttcaagta 50911962  T
Q  357 tga 359  Q
    |||    
T  50911963 tga 50911965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 210 - 359
Target Start/End: Complemental strand, 50910153 - 50910004
Alignment:
Q  210 aaagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattct 309  Q
    ||||||| ||||| |||| |||| ||| ||||| ||   |||| ||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||    
T  50910153 aaagatttatagctcattgaagcgagaagtaatttgcaagaagacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattct 50910054  T
Q  310 tcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatga 359  Q
    || ||  ||||| ||||||||| |||||| || | |||||||||||||||    
T  50910053 tcctccacttgattcaacaagttttgaaatgaagcttggttcaagtatga 50910004  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 257 - 359
Target Start/End: Complemental strand, 38044049 - 38043947
Alignment:
Q  257 cttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagta 356  Q
    |||||||||||||||| |||||||| ||||| || |||||||||||||||||||| || |||||||||| ||||| ||||||||| | ||| ||||||||    
T  38044049 cttcggtgcaaggaattgtgaggccgcccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtttgattcaagta 38043950  T
Q  357 tga 359  Q
    |||    
T  38043949 tga 38043947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 254 - 356
Target Start/End: Complemental strand, 55084935 - 55084833
Alignment:
Q  254 catcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaa 353  Q
    ||||||| ||||||||||| |||||||||||||| || ||||| |||||||||||||| || ||  |||||||||||| |||||| ||||||||||||||    
T  55084935 catcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccaaattcttcctccgcccgactcaacaagtcttgaaatgatggttggttcaa 55084836  T
Q  354 gta 356  Q
    |||    
T  55084835 gta 55084833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 359
Target Start/End: Original strand, 38028714 - 38028862
Alignment:
Q  211 aagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattctt 310  Q
    |||||| |||||||||| |||  ||| ||||||||   |||  | ||||| ||||||||||| |||||||| ||||| || || ||||||||||||||||    
T  38028714 aagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccaaattctt 38028813  T
Q  311 cttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatga 359  Q
    | || ||||||||||||| || |||||| || | |||||||||||||||    
T  38028814 cctcggcttgactcaacaggttttgaaatgaagcttggttcaagtatga 38028862  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 356
Target Start/End: Original strand, 50904792 - 50904885
Alignment:
Q  263 tgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagta 356  Q
    ||||||||||||||||||||||||| || ||||||||||| ||||| || || ||| |||||||||||| |||||| || | ||||||||||||    
T  50904792 tgcaaggaatggtgaggccacccattggatgatcatatccgaattcatcctctgctcgactcaacaagtcttgaaatgaagtttggttcaagta 50904885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 211 - 359
Target Start/End: Original strand, 38040029 - 38040177
Alignment:
Q  211 aagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattctt 310  Q
    |||||| |||||||||| |||  ||| ||||||||   |||  | ||||| ||||||||||| |||||||| ||||| || || |||||||| |||||||    
T  38040029 aagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattctt 38040128  T
Q  311 cttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatga 359  Q
    | || ||||||||||||| || |||||| || | |||||||||||||||    
T  38040129 cctcggcttgactcaacaggttttgaaatgaagcttggttcaagtatga 38040177  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 358
Target Start/End: Original strand, 48840703 - 48840806
Alignment:
Q  254 catcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaa 353  Q
    ||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||  ||  ||| ||||||||||| |||||| || | |||||||||    
T  48840703 catcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattctttctccactt-actcaacaagtcttgaaatgaggcttggttcaa 48840801  T
Q  354 gtatg 358  Q
    |||||    
T  48840802 gtatg 48840806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 188 - 358
Target Start/End: Original strand, 38036718 - 38036888
Alignment:
Q  188 tctatgtcagtatgctacagtaaaagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccat 287  Q
    ||||||||||| | ||| |||  |||||| |||||||||| |||  ||| ||||||||   |||  | | ||| ||||||||||| |||||||| |||||    
T  38036718 tctatgtcagtctcctatagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtattctgtgcaaggaattgtgaggccgcccat 38036817  T
Q  288 ggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatg 358  Q
     || || |||||||| |||||||| || |||||||||||||| | |||||| || | ||||||||||||||    
T  38036818 tggatggtcatatccgaattcttcctcggcttgactcaacaaattttgaaatgaagcttggttcaagtatg 38036888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 211 - 359
Target Start/End: Original strand, 38033723 - 38033875
Alignment:
Q  211 aagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatg----gggtgatcatatccaaat 306  Q
    |||||| |||||||||| |||| ||| ||||||||   |||  ||||||| ||||| ||||| |||| ||| |||||     || || ||||||||||||    
T  38033723 aagatttatagcccattgaagcgagaagtaatatgcaagaaaacatcttctgtgcagggaattgtgatgccgcccattaattggatggtcatatccaaat 38033822  T
Q  307 tcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatga 359  Q
    ||||| || |||||||||||||||| |||||| || | |||||||||||||||    
T  38033823 tcttcctcggcttgactcaacaagttttgaaatgaagcttggttcaagtatga 38033875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 359
Target Start/End: Original strand, 21607288 - 21607392
Alignment:
Q  255 atcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaag 354  Q
    |||||| ||||||||||  |||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||| |||||| || | | ||||||||    
T  21607288 atcttctgtgcaaggaaccgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagctcggttcaag 21607387  T
Q  355 tatga 359  Q
    |||||    
T  21607388 tatga 21607392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 341
Target Start/End: Complemental strand, 21634692 - 21634605
Alignment:
Q  254 catcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacga 341  Q
    ||||||||||||||||||| |||| ||| |||||  | |||||||||||||||||||| || |||||||||| ||||| |||||||||    
T  21634692 catcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacga 21634605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 359
Target Start/End: Original strand, 21604702 - 21604850
Alignment:
Q  211 aagattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattctt 310  Q
    |||||| |||||||||| |||  ||| ||||||||   |||  | ||||| ||||||||||| |||||||| ||||| || || |||||||| |||||||    
T  21604702 aagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatcctaattctt 21604801  T
Q  311 cttcagcttgactcaacaagtgttgaaacgatggttggttcaagtatga 359  Q
    | ||  |||||||||||| || |||||| || | |||||||||||||||    
T  21604802 cctcgtcttgactcaacatgttttgaaatgaagcttggttcaagtatga 21604850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 3073718 - 3073613
Alignment:
Q  254 catcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtgttgaaacgatggttggttcaa 353  Q
    ||||||| ||||||||||| |||||||||||||| || ||||| ||||| |||||||| || ||  |||||| ||||| |||||| || | |||||||||    
T  3073718 catcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggttcaa 3073619  T
Q  354 gtatga 359  Q
    ||||||    
T  3073618 gtatga 3073613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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