View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9804_low_1 (Length: 608)

Name: NF9804_low_1
Description: NF9804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9804_low_1
NF9804_low_1
[»] chr5 (7 HSPs)
chr5 (7-567)||(13879697-13880255)
chr5 (252-564)||(13875477-13875805)
chr5 (260-318)||(13885860-13885918)
chr5 (26-74)||(43358252-43358300)
chr5 (26-76)||(9893692-9893742)
chr5 (265-318)||(13870759-13870812)
chr5 (401-437)||(13885720-13885756)
[»] chr8 (1 HSPs)
chr8 (26-77)||(39433399-39433450)
[»] chr3 (5 HSPs)
chr3 (26-68)||(40962720-40962762)
chr3 (45-79)||(29687069-29687103)
chr3 (26-76)||(36354540-36354590)
chr3 (26-79)||(38330773-38330826)
chr3 (38-75)||(43316634-43316671)
[»] chr4 (3 HSPs)
chr4 (26-69)||(44383445-44383488)
chr4 (26-74)||(35021488-35021536)
chr4 (31-63)||(40849657-40849689)
[»] scaffold0086 (1 HSPs)
scaffold0086 (26-68)||(19076-19118)
[»] chr1 (2 HSPs)
chr1 (38-75)||(7308454-7308491)
chr1 (45-77)||(26834509-26834541)
[»] chr6 (1 HSPs)
chr6 (26-74)||(9444767-9444815)
[»] chr2 (1 HSPs)
chr2 (26-66)||(39986429-39986469)


Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 7 - 567
Target Start/End: Complemental strand, 13880255 - 13879697
Alignment:
Q  7 tttggtggtggccggagttcatattttatatattatttatatcaactgagctaagctcacgagcacaaataaaagtagactttattcaataatgcattgt 106  Q
    ||||||||||||||| ||||||||||||| |||| |  ||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| | ||    
T  13880255 tttggtggtggccggggttcatattttatgtattgtccatatcaactgaactaagctcacgagcagaaataagagtagactttattcaataatgcgt-gt 13880157  T
Q  107 ctcatgatttttacataaataaatgttgaaatttattaactactaatccgatagactatgaggagtgattaactctaaaaaa-gaaaagaactaaatgaa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13880156 ctcatgatttttacataaataaatgttgaaatttattaactactaatccgatagactatgaggagtgattaactctaaaaaaagaaaagaactaaatgaa 13880057  T
Q  206 ttaaaaatgatgaatgaactaagttatatggtgagagtgattcaatgaaaaagtgacacgtcactaagcaaagtctcttgatagccaagttagtatcctt 305  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13880056 ttaaaaatgatgaatgaactaagttatatggtgagagtaattcaatgaaaaagtgacacgtcactaagcaaagtctcttgatagccaagttagtatcctt 13879957  T
Q  306 ctagaacattcttaagccatttttcactacaaaaaccctaaaagcaagcgataaagagagaaagcaatcccaagaaaatctcactctgtcaactgtcaac 405  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||    
T  13879956 ctagaacattctaaagccatttttcactacaaaaaccctaaaagcaagcgataaagagagaaagcaatcccaagaaaatctca--ctgtcaactgttaac 13879859  T
Q  406 acaatggcattttcccgcctcctttcttcctcttaccactctttcatgtccgccgtgcctgcattcattcgccaccgccccttcgctactgccgccatgt 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13879858 acaatggcattttcccgcctcctttcttcctcttaccactctttcatgtccgccgtgcctgcattcattcgccaccgccccttcgctactgccgccatgt 13879759  T
Q  506 ctctggttgccatctcctacgctgctcctcgactcattcactatttcaacaccaatgagctg 567  Q
    ||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||||||    
T  13879758 ctctggttgccatctcctacgccactccacgactcattcgctatttcaacaccaatgagctg 13879697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 252 - 564
Target Start/End: Complemental strand, 13875805 - 13875477
Alignment:
Q  252 gaaaaagtgacacgtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattcttaagccatttt----------tcactacaaaaac 341  Q
    ||||| |||||||||||| || ||||||  |||| || ||||||||||||||||||||||||||||||||||||||           |||||||||||||    
T  13875805 gaaaacgtgacacgtcacaaaacaaagtggcttggtaaccaagttagtatccttctagaacattcttaagccatttcactaactcactcactacaaaaac 13875706  T
Q  342 cctaaaagcaagcgataaagagagaaagcaatcccaagaaaatctc--actctgtcaactg--------tcaacacaatggcattttcccgcctcctttc 431  Q
    |||||||  |||    ||||| ||||||||||||||| ||||||||  | ||||| || |         |||||||||||||||||||||||||||| ||    
T  13875705 cctaaaattaag----aaagaaagaaagcaatcccaaaaaaatctctaaatctgtgaagtcaagtttcttcaacacaatggcattttcccgcctcctctc 13875610  T
Q  432 ttcctcttaccactctttcatgtccgccgtgcctgcattcattcgccaccgccccttcgctactgccgccatgtctctggttgccatctcctacgctgct 531  Q
    |||||  |||| ||| |||||| ||||||||||| || ||||||||| || |||| ||||||||||||||||||| || || |||||||||||| | ||     
T  13875609 ttcctgctaccgctcattcatggccgccgtgccttcactcattcgccgccaccccgtcgctactgccgccatgtcactcgtagccatctcctacaccgca 13875510  T
Q  532 cctcgactcattcactatttcaacaccaatgag 564  Q
    |||| |||||||| |||||||||||||||||||    
T  13875509 cctccactcattcgctatttcaacaccaatgag 13875477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 13885918 - 13885860
Alignment:
Q  260 gacacgtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattctt 318  Q
    ||||||||||||||||||||  |||| |||||||| ||||||||||||||||| |||||    
T  13885918 gacacgtcactaagcaaagtggcttggtagccaaggtagtatccttctagaaccttctt 13885860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 43358300 - 43358252
Alignment:
Q  26 catattttatatattatttatatcaactgagctaagctcacgagcacaa 74  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||| ||||    
T  43358300 catattttatacattatctataccaactgagctaagctcacgaggacaa 43358252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 9893692 - 9893742
Alignment:
Q  26 catattttatatattatttatatcaactgagctaagctcacgagcacaaat 76  Q
    ||||||||||  ||||| ||||||||||||||||||||| |||| ||||||    
T  9893692 catattttatgcattatctatatcaactgagctaagctcgcgaggacaaat 9893742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 13870812 - 13870759
Alignment:
Q  265 gtcactaagcaaagtctcttgatagccaagttagtatccttctagaacattctt 318  Q
    |||| ||||||||||  |||| |||||||||||||||| ||||||||| |||||    
T  13870812 gtcagtaagcaaagtggcttggtagccaagttagtatcattctagaaccttctt 13870759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 401 - 437
Target Start/End: Complemental strand, 13885756 - 13885720
Alignment:
Q  401 tcaacacaatggcattttcccgcctcctttcttcctc 437  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  13885756 tcaacacaatggcattttcccgcttcctctcttcctc 13885720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 39433450 - 39433399
Alignment:
Q  26 catattttatatattatttatatcaactgagctaagctcacgagcacaaata 77  Q
    |||||||||| |||| || ||||||||||||||||||||||||| |||||||    
T  39433450 catattttatgtattgttcatatcaactgagctaagctcacgaggacaaata 39433399  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 40962762 - 40962720
Alignment:
Q  26 catattttatatattatttatatcaactgagctaagctcacga 68  Q
    ||||||||||||||| |||||| ||||||||||||||||||||    
T  40962762 catattttatatattgtttatagcaactgagctaagctcacga 40962720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 29687103 - 29687069
Alignment:
Q  45 atatcaactgagctaagctcacgagcacaaataaa 79  Q
    ||||||||||||||||||||||||| |||||||||    
T  29687103 atatcaactgagctaagctcacgaggacaaataaa 29687069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 36354540 - 36354590
Alignment:
Q  26 catattttatatattatttatatcaactgagctaagctcacgagcacaaat 76  Q
    ||||| ||||||||| || |||||||||||||||||||||| || ||||||    
T  36354540 catatattatatatttttcatatcaactgagctaagctcacaagaacaaat 36354590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 38330773 - 38330826
Alignment:
Q  26 catattttatatattatttatatcaactgagctaagctcacgagcacaaataaa 79  Q
    ||||| ||||||||| |||||| ||| ||||||||||||||||  |||||||||    
T  38330773 catatattatatattgtttataccaattgagctaagctcacgaagacaaataaa 38330826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 43316634 - 43316671
Alignment:
Q  38 attatttatatcaactgagctaagctcacgagcacaaa 75  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  43316634 attatctatatcaactgagctaagctcacgaggacaaa 43316671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 44383488 - 44383445
Alignment:
Q  26 catattttatatattatttatatcaactgagctaagctcacgag 69  Q
    ||||||||||||||| |||||| ||||||||||||| |||||||    
T  44383488 catattttatatattgtttataccaactgagctaagttcacgag 44383445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 35021488 - 35021536
Alignment:
Q  26 catattttatatattatttatatcaactgagctaagctcacgagcacaa 74  Q
    |||||||||| |||| |  ||||||||||||||||||||||||| ||||    
T  35021488 catattttatgtattgtccatatcaactgagctaagctcacgaggacaa 35021536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 40849689 - 40849657
Alignment:
Q  31 tttatatattatttatatcaactgagctaagct 63  Q
    |||||| ||||||||||||||||||||||||||    
T  40849689 tttatacattatttatatcaactgagctaagct 40849657  T

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Target: scaffold0086 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 19076 - 19118
Alignment:
Q  26 catattttatatattatttatatcaactgagctaagctcacga 68  Q
    ||||||||||||||| |||||| |||||||| |||||||||||    
T  19076 catattttatatattgtttataccaactgagttaagctcacga 19118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 7308454 - 7308491
Alignment:
Q  38 attatttatatcaactgagctaagctcacgagcacaaa 75  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  7308454 attatctatatcaactgagctaagctcacgagtacaaa 7308491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 26834541 - 26834509
Alignment:
Q  45 atatcaactgagctaagctcacgagcacaaata 77  Q
    ||||||||||||||||||||||||| |||||||    
T  26834541 atatcaactgagctaagctcacgaggacaaata 26834509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 9444815 - 9444767
Alignment:
Q  26 catattttatatattatttatatcaactgagctaagctcacgagcacaa 74  Q
    ||||| |||||| ||||  ||| ||||||||||||||||||||||||||    
T  9444815 catatattatattttatccataccaactgagctaagctcacgagcacaa 9444767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 39986429 - 39986469
Alignment:
Q  26 catattttatatattatttatatcaactgagctaagctcac 66  Q
    |||||||||| |||||||||||| || ||||||||||||||    
T  39986429 catattttatgtattatttatattaagtgagctaagctcac 39986469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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