View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9804_low_12 (Length: 337)
Name: NF9804_low_12
Description: NF9804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9804_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 32616914 - 32617165
Alignment:
| Q |
1 |
gcatggttagaagctatagcatacgtgatgttgggaattgctatgttgtcacttcttgcagagcctctaatagcaagtgttcaaaaattctctgaagctg |
100 |
Q |
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| T |
32616914 |
gcatggttagaagctatagcatacgtgatgttgggaattgctatgttgtcacttcttgcggagcctctaatagcaagtgttcaaaaattctctgaagctg |
32617013 |
T |
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| Q |
101 |
caggaatttcatcatttttcatctctttcattttagtccctttggctacaaattttagagaagcaacctcagcaatcaaagaagctagccacnnnnnnng |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32617014 |
caggaatttcatcatttttcatctctttcattttagtccctttggctacaaattttagagaagcaacctcagcaatcaaagaagctagccacaaaaaaag |
32617113 |
T |
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| Q |
201 |
cagtaatacttctcacactatgtatgaggttagtcatgttcctctgtcagtc |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32617114 |
cagtaatacttctcacactatgtatgaggttagtcatgttcctctgtcagtc |
32617165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 32635594 - 32635896
Alignment:
| Q |
1 |
gcatggttagaagctatagcatacgtgatgttgggaattgctatgttgtcacttcttgcagagcctctaatagcaagtgttcaaaaattctctgaagctg |
100 |
Q |
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||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
32635594 |
gcatggttagaagctatagcatatgtggtgttgggaattactatgttgtcaattcttgcggagcctctaatagcaagtgttcaaaaattctccgaagctg |
32635693 |
T |
|
| Q |
101 |
caggaatttcatcatttttcatctctttcattttagtccctttggctacaaattttagagaagcaacctcagcaatcaaagaagctagccacnnnnnnng |
200 |
Q |
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| T |
32635694 |
caggaatttcatcatttttcatctctttcattttagtccctttggctacaaattttagagaagcaacctcagctatcaaagaagctagccacaaaaaaag |
32635793 |
T |
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| Q |
201 |
cagtaatacttctcacactatgtatgaggttagtcatgttcctctgtcagtccactacaacatatatgacatttagtaatatttgaaaaatgttagtaag |
300 |
Q |
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||||| ||||||||||| |||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
32635794 |
tagtaacacttctcacacgatgtatgaggttagtcgtgttcctctctcagtcaactgcaacatatatgacatttaataatatttgaaaaatgttactaag |
32635893 |
T |
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| Q |
301 |
tat |
303 |
Q |
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||| |
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| T |
32635894 |
tat |
32635896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 7732226 - 7732272
Alignment:
| Q |
253 |
cactacaacatatatgacatttagtaatatttgaaaaatgttagtaa |
299 |
Q |
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| T |
7732226 |
cactacaacatatatgagatttagtaacacttgaaaaatgttagtaa |
7732272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 11573578 - 11573621
Alignment:
| Q |
253 |
cactacaacatatatgacatttagtaatatttgaaaaatgttag |
296 |
Q |
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| T |
11573578 |
cactacaacatatatgaaatttagtattatttgataaatgttag |
11573621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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