View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9804_low_16 (Length: 293)
Name: NF9804_low_16
Description: NF9804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9804_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 42087469 - 42087755
Alignment:
| Q |
1 |
tattcttgttctatcctttttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttgca |
100 |
Q |
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| T |
42087469 |
tattcttgttctatcctttttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttgca |
42087568 |
T |
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| Q |
101 |
tcttcttccttggttccaactttgattctgactcaaatatgcattctagtgatcttatctgttcatcactaaaccttctcttgttttctatcttcttgtt |
200 |
Q |
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| T |
42087569 |
tcttcttccttggttccaactttgattctgactcaaatatgcattctagtgatcttatctgttcatcactaaaccttctcttgttttctatcttcttgtt |
42087668 |
T |
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| Q |
201 |
tttcttctttgaattctgaggtgtctccaagcaactcatgctttcaacattttttcctttaaacccttcatgaatattctctgcttc |
287 |
Q |
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| T |
42087669 |
tttcttctttgaattctgaggtgtctctaagcaactcatgctttcaacattttttcctttaaacccttcatgaatattctcttcttc |
42087755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 39342750 - 39342692
Alignment:
| Q |
25 |
ttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaag |
83 |
Q |
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| T |
39342750 |
ttccatcttgctctcctgttttggaaccaaacagctacttgtctaggctgcaacccaag |
39342692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 9379118 - 9379021
Alignment:
| Q |
19 |
tttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttgcatcttcttccttggttc |
116 |
Q |
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| T |
9379118 |
tttgatttccatctagctcttttgttttgaaaccatatagcaacttgtcttggctgcaatccaagctctctagctaactgcaacttctttcttggttc |
9379021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 24692391 - 24692455
Alignment:
| Q |
37 |
cttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttgcat |
101 |
Q |
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| T |
24692391 |
cttctgttttgaaaccatatagcaatttgtcttggctgcaatccaagagctcttgctagctgcat |
24692455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 16762999 - 16763066
Alignment:
| Q |
31 |
cttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttg |
98 |
Q |
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| T |
16762999 |
cttgcccttctgttttgaaaccatatagcaacttgtcttggttgcaaaccaagctcttttgcaagttg |
16763066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 17181907 - 17181983
Alignment:
| Q |
25 |
ttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttgcat |
101 |
Q |
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| T |
17181907 |
ttccatcttgcccttctattttgaaaccatatagcaacttgtctaggttgcaagttaagagctcttgcaagctgcat |
17181983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 2342778 - 2342836
Alignment:
| Q |
19 |
tttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaa |
77 |
Q |
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|||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
2342778 |
tttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaa |
2342836 |
T |
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