View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9804_low_17 (Length: 287)

Name: NF9804_low_17
Description: NF9804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9804_low_17
NF9804_low_17
[»] chr4 (8 HSPs)
chr4 (17-277)||(8975248-8975510)
chr4 (15-255)||(8972537-8972777)
chr4 (15-253)||(9002599-9002837)
chr4 (15-255)||(9027024-9027264)
chr4 (15-197)||(8952241-8952423)
chr4 (15-155)||(8930609-8930749)
chr4 (15-152)||(8916769-8916906)
chr4 (15-152)||(8905925-8906062)
[»] chr5 (2 HSPs)
chr5 (15-155)||(9401614-9401754)
chr5 (15-152)||(20075962-20076099)
[»] scaffold0287 (1 HSPs)
scaffold0287 (37-156)||(14118-14237)
[»] chr7 (1 HSPs)
chr7 (37-156)||(3631848-3631967)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 8975510 - 8975248
Alignment:
Q  17 aaacaacaatagctggtcttaaaccaagttgaagtgaaaatagaggaccatatatttttgagaattgagaaaattgaagataaagattagaaatgtctag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8975510 aaacaacaatagctggtcttaaaccaagttgaagtgaaaatagaggaccatatatttttgagaattgagaaaattgaagataaagattagaaatgtctag 8975411  T
Q  117 ttgatgaagattccctattattggaaggcctttaggacctgggggatagtgtttaatggttctatgtttgtggaagaacattaacaatggaataattagg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8975410 ttgatgaagattccctattattggaaggcctttaggacctggggggtagtgtttaatggttctatgtttgtggaagaacattaacaatggaataattagg 8975311  T
Q  217 catagaacagatagaaatagtagtggcaacattgttacacttac--aattaatgtgacctatg 277  Q
    ||||||||| |||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  8975310 catagaacaaatagaaatagcagtggcaacattgttacacttacaaaattaatgtgacctatg 8975248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 8972537 - 8972777
Alignment:
Q  15 agaaacaacaatagctggtcttaaaccaagttgaagtgaaaatagaggaccatatatttttgagaattgagaaaattgaagataaagattagaaatgtct 114  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| |||    
T  8972537 agaaacaacaatagcttgtcttaaaccaagtgaaagtgaaaatagaggaccatataattttgagaattgagataattgaagataaagcttagaaatatct 8972636  T
Q  115 agttgatgaagattccctattattggaaggcctttaggacctgggggatagtgtttaatggttctatgtttgtggaagaacattaacaatggaataatta 214  Q
    |||||||||||||| |||||||| ||||||||||||||||| || ||||| | |||| ||||||||| ||||||||||||||| | ||| |||| ||| |    
T  8972637 agttgatgaagatttcctattatgggaaggcctttaggaccaggtggataatttttattggttctatatttgtggaagaacataagcaaaggaagaatga 8972736  T
Q  215 ggcatagaacagatagaaatagtagtggcaacattgttaca 255  Q
     ||| | |||| | |||||||||||||  ||||||||||||    
T  8972737 agcacacaacaaagagaaatagtagtgaaaacattgttaca 8972777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 9002599 - 9002837
Alignment:
Q  15 agaaacaacaatagctggtcttaaaccaagttgaagtgaaaatagaggaccatatatttttgagaattgagaaaattgaagataaagattagaaatgtct 114  Q
    ||||||||||||||||  |||||| |||||||||| ||||||||||||||||||| | |||||||||||||||| ||||| |  ||||||||||||||||    
T  9002599 agaaacaacaatagcttttcttaatccaagttgaattgaaaatagaggaccatatgtctttgagaattgagaaagttgaataggaagattagaaatgtct 9002698  T
Q  115 agttgatgaagattccctattattggaaggcctttaggacctgggggatagtgtttaatggttctatgtttgtggaagaacattaacaatggaataatta 214  Q
    |||||||||||||| |||||||| |||||||||||||||||  | ||||| |||||||| |||||||| || |||||||| |||| ||| ||||||||||    
T  9002699 agttgatgaagatttcctattatgggaaggcctttaggaccaagtggataatgtttaattgttctatggttttggaagaatattagcaaaggaataatta 9002798  T
Q  215 ggcatagaacagatagaaatagtagtggcaacattgtta 253  Q
    |||||||| ||  ||||||||||| || |||||||||||    
T  9002799 ggcatagagcaagtagaaatagtactgacaacattgtta 9002837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 9027264 - 9027024
Alignment:
Q  15 agaaacaacaatagctggtcttaaaccaagttgaagtgaaaatagaggaccatatatttttgagaattgagaaaattgaagataaagattagaaatgtct 114  Q
    ||||||||||||||||  |||||| |||||||||| ||||||||||||||||||||| |||||||||||||||| ||||| |  ||||||||||||||||    
T  9027264 agaaacaacaatagcttttcttaatccaagttgaattgaaaatagaggaccatatatctttgagaattgagaaagttgaataggaagattagaaatgtct 9027165  T
Q  115 agttgatgaagattccctattattggaaggcctttaggacctgggggatagtgtttaatggttctatgtttgtggaagaacattaacaatggaataatta 214  Q
    |||||||||||||| |||||||| ||||| |||||||||||  | ||||| ||||||||||||||||| || |||||||| |||| ||| |||| |||||    
T  9027164 agttgatgaagatttcctattatgggaagtcctttaggaccaagtggataatgtttaatggttctatggttttggaagaatattagcaaaggaagaatta 9027065  T
Q  215 ggcatagaacagatagaaatagtagtggcaacattgttaca 255  Q
    |||||||| ||  ||||| ||||| || |||||||||||||    
T  9027064 ggcatagagcaagtagaattagtattgacaacattgttaca 9027024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 8952423 - 8952241
Alignment:
Q  15 agaaacaacaatagctggtcttaaaccaagttgaagtgaaaatagaggaccatatatttttgagaattgagaaaattgaagataaagattagaaatgtct 114  Q
    |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||| || |||||| || || |||    
T  8952423 agaaacaacaatagctggtcttaaaccaagtttaagtgaaaacaaaggaccatatatctttgagaattgagaaaattgaaaatgaagatttgagatatct 8952324  T
Q  115 agttgatgaagattccctattattggaaggcctttaggacctgggggatagtgtttaatggttctatgtttgtggaagaacat 197  Q
    |||||  |||||||||||||||||||||||||||||||||| || ||||  | | || | ||| |||||||||||||||||||    
T  8952323 agttgtagaagattccctattattggaaggcctttaggaccaggtggattatttgtatttgttttatgtttgtggaagaacat 8952241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 8930609 - 8930749
Alignment:
Q  15 agaaacaacaatagctggtcttaaaccaagttgaagtgaaaatagaggaccatatatttttgagaattgagaaaattgaagataaagattagaaatgtct 114  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||  || ||||| |||||||| | ||  |||||||||||||||||| ||||| |||||    
T  8930609 agaaacaacaatagctgatcttaaacctagttgaagtgaaaatattggtccataaatttttgaaagttttgaaaattgaagataaagaatagaattgtct 8930708  T
Q  115 agttgatgaagattccctattattggaaggcctttaggacc 155  Q
    ||||||||||||||||||||||| || |||||| |||||||    
T  8930709 agttgatgaagattccctattatgggtaggcctctaggacc 8930749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 8916769 - 8916906
Alignment:
Q  15 agaaacaacaatagctggtcttaaaccaagttgaagtgaaaatagaggaccatatatttttgagaattgagaaaattgaagataaagattagaaatgtct 114  Q
    |||||||||||| ||||| |||||||||||||  |  |||||||  || ||||| |||||||| | ||  || ||||||||||||||| ||||| ||||     
T  8916769 agaaacaacaattgctggccttaaaccaagtttcaaggaaaatattggtccataaatttttgaaagttttgataattgaagataaagaatagaattgtca 8916868  T
Q  115 agttgatgaagattccctattattggaaggcctttagg 152  Q
    || |||||||||||||| ||||| || |||||| ||||    
T  8916869 agctgatgaagattcccaattatgggtaggcctctagg 8916906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 8905925 - 8906062
Alignment:
Q  15 agaaacaacaatagctggtcttaaaccaagttgaagtgaaaatagaggaccatatatttttgagaattgagaaaattgaagataaagattagaaatgtct 114  Q
    |||||||||||| ||||| |||||||||||||  |  |||||||  || ||||| |||||||| |  |  || ||||||||||||||| ||||| ||||     
T  8905925 agaaacaacaattgctggccttaaaccaagtttcaaggaaaatattggtccataaatttttgaaagatttgataattgaagataaagaatagaattgtca 8906024  T
Q  115 agttgatgaagattccctattattggaaggcctttagg 152  Q
    || |||||||||||||| ||||| || |||||| ||||    
T  8906025 agctgatgaagattcccaattatgggtaggcctctagg 8906062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 9401614 - 9401754
Alignment:
Q  15 agaaacaacaatagctggtcttaaaccaagttgaagtgaaaatagaggaccatatatttttgagaattgagaaaattgaagataaagattagaaatgtct 114  Q
    |||||||||||| ||||| |||||||||||||||||||||||||  || |||||||||||||| | ||  || ||||||||||||||| ||||| |||||    
T  9401614 agaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttgaaagttttgataattgaagataaagagtagaattgtct 9401713  T
Q  115 agttgatgaagattccctattattggaaggcctttaggacc 155  Q
    || |||||||||||||||||||| || |||||| |||||||    
T  9401714 agctgatgaagattccctattatgggtaggcctctaggacc 9401754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 20075962 - 20076099
Alignment:
Q  15 agaaacaacaatagctggtcttaaaccaagttgaagtgaaaatagaggaccatatatttttgagaattgagaaaattgaagataaagattagaaatgtct 114  Q
    |||||||||||| ||||| |||||||||||||  |  |||||||  || ||||| |||||||| | ||  || ||||||||||| ||| ||||| | ||     
T  20075962 agaaacaacaattgctggccttaaaccaagtttcatggaaaatattggtccataaatttttgaaagttttgataattgaagatagagaatagaattatca 20076061  T
Q  115 agttgatgaagattccctattattggaaggcctttagg 152  Q
    || |||||||||||||| ||||| || |||||| ||||    
T  20076062 agctgatgaagattcccaattatgggtaggcctctagg 20076099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 14237 - 14118
Alignment:
Q  37 aaaccaagttgaagtgaaaatagaggaccatatatttttgagaattgagaaaattgaagataaagattagaaatgtctagttgatgaagattccctatta 136  Q
    ||||||| |||||| || || ||||||||||| ||||||||||  |   ||||||| | || |||||| ||| |||| |||||||| ||||| || ||||    
T  14237 aaaccaatttgaagagagaaaagaggaccatagatttttgagagattccaaaattgtaaatgaagatttgaagtgtcaagttgatggagatttccaatta 14138  T
Q  137 ttggaaggcctttaggacct 156  Q
    | ||||||||||| ||||||    
T  14137 taggaaggccttttggacct 14118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 3631848 - 3631967
Alignment:
Q  37 aaaccaagttgaagtgaaaatagaggaccatatatttttgagaattgagaaaattgaagataaagattagaaatgtctagttgatgaagattccctatta 136  Q
    ||||||| |||||| || || ||||||||||| ||||||||||  |   ||||||| | || |||||| ||| |||| |||||||| ||||| || ||||    
T  3631848 aaaccaatttgaagagagaaaagaggaccatagatttttgagagattccaaaattgtaaatgaagatttgaagtgtcaagttgatggagatttccaatta 3631947  T
Q  137 ttggaaggcctttaggacct 156  Q
    | ||||||||||| ||||||    
T  3631948 taggaaggccttttggacct 3631967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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