View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9804_low_2 (Length: 463)
Name: NF9804_low_2
Description: NF9804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9804_low_2 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 59 - 321
Target Start/End: Original strand, 7018379 - 7018644
Alignment:
| Q |
59 |
aaaagtaacgttttttactattcatttttagaaactttgacatacgaactacatgtgtaatttaaatttttaatttatgnnnnnnnn--caataatatta |
156 |
Q |
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| T |
7018379 |
aaaaataacattttttactattcatttttagaaactttgacatgcgaactacatgtgtaattttaatttttaatttatgttttttttttcaataatatta |
7018478 |
T |
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| Q |
157 |
tccatatatattaaagattacttacacatgaaaataagtcaaacgggtaacaagctttgccgttaagccttttatagatttaattctgt--nnnnnnntt |
254 |
Q |
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| T |
7018479 |
tccatatatattaaagattatttacacatgaaaataagtcgaac-ggtaaaaagctttgccgttaagccttttatagatttaattctttaaaaaaaaatt |
7018577 |
T |
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| Q |
255 |
atggatttaattgatgtatgtgcaaaactgttttatactaatagtgtatgcaaatacaattctttaa |
321 |
Q |
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| T |
7018578 |
atggatttaattgatgtatgtgcaaaactgttttatactaatagtgtatgcaaatacaattctttaa |
7018644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 7018649 - 7018712
Alignment:
| Q |
381 |
gtaatgtagagttcgacaaagagataaatgaagtctgtttaaaatttgttctcgatcaacattg |
444 |
Q |
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| T |
7018649 |
gtaatgtagagttcgacaaagagataaatgaagtttgtttaaaatttgttctcgatcgacattg |
7018712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 7018302 - 7018348
Alignment:
| Q |
18 |
gggacaagttcaaaccccgaacacccaacttgttcactttaaaaagt |
64 |
Q |
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| T |
7018302 |
gggacaggttcaaatcccgagcacccaacttgttcactttaaaaagt |
7018348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 7036747 - 7036790
Alignment:
| Q |
69 |
ttttttactattcatttttagaaactttgacatacgaactacat |
112 |
Q |
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| T |
7036747 |
ttttttactattcatatttagaaactttgacatgtgaactacat |
7036790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 7037556 - 7037605
Alignment:
| Q |
272 |
atgtgcaaaactgttttatactaatagtgtatgcaaatacaattctttaa |
321 |
Q |
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| T |
7037556 |
atgtgtaaaactgttttataccattagtgtatgccaattcaattctttaa |
7037605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 108404 - 108363
Alignment:
| Q |
25 |
gttcaaaccccgaacacccaacttgttcactttaaaaagtaa |
66 |
Q |
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| T |
108404 |
gttcaaaccccggacaccccacttattcactttaaaaagtaa |
108363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 10587214 - 10587162
Alignment:
| Q |
160 |
atatatattaaagattacttacacatgaaaataagtcaaacgggtaacaagct |
212 |
Q |
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| T |
10587214 |
atatatatcaaggattacttacacatgaatagaaggcaaacgggcaacaagct |
10587162 |
T |
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