View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9804_low_24 (Length: 226)
Name: NF9804_low_24
Description: NF9804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9804_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 36914436 - 36914596
Alignment:
| Q |
36 |
tcatgtttattttggtagaactgtaacaaatgtcctgtaacctttctaacttttggccaacactattgccactatccctcactcccaccttcacacacaa |
135 |
Q |
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| T |
36914436 |
tcatgtttattttggtagaactgtaacaaatgtcctgtaacctttctagcttttggccaacgctat---------ccctcactcccaccttcacacacaa |
36914526 |
T |
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| Q |
136 |
ggtgtcaatttaccacctactcatcttaatttggtcacactcacacatctcaagctgtgcctcacacatg |
205 |
Q |
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| T |
36914527 |
ggtgtcaatttaccacctactcatcttaatttggtcacagtcacacatctcaagctctgcctcgcacatg |
36914596 |
T |
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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 36914069 - 36914166
Alignment:
| Q |
108 |
tatccctcactcccaccttcacacacaaggtgtcaatttaccacctactcatcttaatttggtcacactcacacatctcaagctgtgcctcacacatg |
205 |
Q |
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| T |
36914069 |
tatccctccctccctccttcacgcacaatgtgtcaatttgccacctacttatcttgctttggtcatagttacacatctcaagctttgtctcgcacatg |
36914166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 36914312 - 36914396
Alignment:
| Q |
121 |
caccttcacacacaaggtgtcaatttaccacctactcatcttaatttggtcacactcacacatctcaagctgtgcctcacacatg |
205 |
Q |
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| T |
36914312 |
caccttcacgcacaatgtgtcaatttgccatcgcctcatcttgctttggtcacgaccacacatctcaagctctgtgtcacacatg |
36914396 |
T |
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