View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9804_low_25 (Length: 215)

Name: NF9804_low_25
Description: NF9804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9804_low_25
NF9804_low_25
[»] chr4 (3 HSPs)
chr4 (1-181)||(48963233-48963413)
chr4 (8-114)||(48959158-48959264)
chr4 (1-106)||(48966354-48966459)
[»] chr8 (1 HSPs)
chr8 (8-185)||(12640543-12640717)
[»] chr6 (2 HSPs)
chr6 (9-123)||(12589250-12589364)
chr6 (8-190)||(12482517-12482696)
[»] chr2 (2 HSPs)
chr2 (1-99)||(13441232-13441330)
chr2 (143-195)||(13449302-13449354)
[»] chr7 (1 HSPs)
chr7 (38-96)||(3416622-3416680)
[»] chr5 (2 HSPs)
chr5 (33-102)||(28386357-28386426)
chr5 (12-96)||(12541708-12541792)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 48963413 - 48963233
Alignment:
Q  1 atatcttgcacctggtcatatgattcctttgggtgacatagcagctctgtttgcgtcccgtgtccaacaagtcacaatcatcaccattccatccaacgcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  48963413 atatcttgcacctggtcatatgattcctttgggtgacatagcagctctgtttgcgtcccgtggccaacaagtcacaatcatcaccactccctccaacgcc 48963314  T
Q  101 cacttcttcaccaataagtctccttcctttgccgatcccctcttccttcgccttcataccgtcgacttcccctccaaacaa 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48963313 cacttcttcaccaataagtctccttcctttgccgatcccctcttccttcgccttcataccatcgacttcccctccaaacaa 48963233  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 48959264 - 48959158
Alignment:
Q  8 gcacctggtcatatgattcctttgggtgacatagcagctctgtttgcgtcccgtgtccaacaagtcacaatcatcaccattccatccaacgcccacttct 107  Q
    |||||||| |||||||| ||  || ||||||||||| |||||||||| |||| || ||||||||| ||||||||||||| ||| |||||| |||||||||    
T  48959264 gcacctgggcatatgatccccatgtgtgacatagcaactctgtttgcatcccatggccaacaagtgacaatcatcaccactccctccaactcccacttct 48959165  T
Q  108 tcaccaa 114  Q
    | |||||    
T  48959164 ttaccaa 48959158  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 48966459 - 48966354
Alignment:
Q  1 atatcttgcacctggtcatatgattcctttgggtgacatagcagctctgtttgcgtcccgtgtccaacaagtcacaatcatcaccattccatccaacgcc 100  Q
    |||||| ||||| || |||||||| ||| || ||||||||||| || | ||||| || | || |||||||||||| |||||||| | ||| || ||||||    
T  48966459 atatctagcaccaggccatatgatccctatgtgtgacatagcaactatctttgcatctcatggccaacaagtcaccatcatcacaactccctctaacgcc 48966360  T
Q  101 cacttc 106  Q
     |||||    
T  48966359 aacttc 48966354  T

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Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 12640543 - 12640717
Alignment:
Q  8 gcacctggtcatatgattcctttgggtgacatagcagctctgtttgcgtcccgtgtccaacaagtcacaatcatcaccattccatccaacgcccacttct 107  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||||||||||| |||||||||| ||| ||||||||||| ||||    
T  12640543 gcacctggtcatatgattcctttgggtgacatagcagctttgtttgcatcccatggccaacaagtcacgatcatcaccactccctccaacgcccatttct 12640642  T
Q  108 tcaccaataagtctccttcctttgccgatcccctcttccttcgccttcataccgtcgacttcccctccaaacaagtcg 185  Q
    | |||   || ||||  ||||| | ||||||  | ||||| |||||||| |||||||||||||||||| |||||||||    
T  12640643 ttacc---aaatctctctccttcgtcgatccgtttttcctccgccttcacaccgtcgacttcccctcccaacaagtcg 12640717  T

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Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 12589250 - 12589364
Alignment:
Q  9 cacctggtcatatgattcctttgggtgacatagcagctctgtttgcgtcccgtgtccaacaagtcacaatcatcaccattccatccaacgcccacttctt 108  Q
    ||||||| |||||||| ||| |  ||||||| ||| | |||||||| ||||||| ||||||||||||||||| ||||| ||| |  ||| ||||||||||    
T  12589250 cacctgggcatatgatccctctatgtgacattgcaaccctgtttgcatcccgtggccaacaagtcacaatcaccaccactcccttgaactcccacttctt 12589349  T
Q  109 caccaataagtctcc 123  Q
    |||||| ||||||||    
T  12589350 caccaacaagtctcc 12589364  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 12482517 - 12482696
Alignment:
Q  8 gcacctggtcatatgattcctttgggtgacatagcagctctgtttgcgtcccgtgtccaacaagtcacaatcatcaccattccatccaacgcccacttct 107  Q
    |||||||| |||||||| ||| || |  | || ||| |||||||||| || |||| ||| || |||||||||||||||| ||| |||||| |||||||||    
T  12482517 gcacctgggcatatgatccctatgtgcaagattgcaactctgtttgcatcacgtggccatcatgtcacaatcatcaccactccttccaacacccacttct 12482616  T
Q  108 tcaccaataagtctccttcctttgccgatcccctcttccttcgccttcataccgtcgacttcccctccaaacaagtcggcctc 190  Q
    ||||||| |||  | | ||||| |||  |||| |||||   | |||||| ||||||||||| |||| | || |||||||||||    
T  12482617 tcaccaacaagaattcctccttcgccattcccttcttc---caccttcacaccgtcgactttcccttccaagaagtcggcctc 12482696  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 13441330 - 13441232
Alignment:
Q  1 atatcttgcacctggtcatatgattcctttgggtgacatagcagctctgtttgcgtcccgtgtccaacaagtcacaatcatcaccattccatccaacgc 99  Q
    |||||| ||| |||| |||||||| ||| |  ||||||||||| || ||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||    
T  13441330 atatctagcatctggacatatgatccctctttgtgacatagcaactatgtttgcatcccgtggccaacaagtcacaatcatcaccactccctccaacgc 13441232  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 13449354 - 13449302
Alignment:
Q  143 ttccttcgccttcataccgtcgacttcccctccaaacaagtcggcctccctga 195  Q
    |||||||| ||||| ||||| |||||||||||| |||||||||||||||||||    
T  13449354 ttccttcgtcttcacaccgttgacttcccctcccaacaagtcggcctccctga 13449302  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 3416622 - 3416680
Alignment:
Q  38 atagcagctctgtttgcgtcccgtgtccaacaagtcacaatcatcaccattccatccaa 96  Q
    ||||||||| ||||||| |||| || |||||| |||||||||||||||| ||| |||||    
T  3416622 atagcagctatgtttgcatcccatggccaacatgtcacaatcatcaccactccctccaa 3416680  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 28386426 - 28386357
Alignment:
Q  33 gtgacatagcagctctgtttgcgtcccgtgtccaacaagtcacaatcatcaccattccatccaacgccca 102  Q
    |||| |||||| || ||||||| || |||| |||||| |||||||||||||||| ||| ||||| |||||    
T  28386426 gtgatatagcaactttgtttgcatcacgtggccaacatgtcacaatcatcaccactccctccaatgccca 28386357  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 12541792 - 12541708
Alignment:
Q  12 ctggtcatatgattcctttgggtgacatagcagctctgtttgcgtcccgtgtccaacaagtcacaatcatcaccattccatccaa 96  Q
    |||| |||||||| ||| |  |||| |||||| || ||||||| || | || ||||||||||||||||||||||| ||| |||||    
T  12541792 ctggacatatgatccctctttgtgatatagcaactttgtttgcatcacatggccaacaagtcacaatcatcaccactccctccaa 12541708  T

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