View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9804_low_27 (Length: 204)

Name: NF9804_low_27
Description: NF9804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9804_low_27
NF9804_low_27
[»] chr6 (8 HSPs)
chr6 (20-189)||(2447416-2447585)
chr6 (20-87)||(2431340-2431407)
chr6 (20-91)||(2584066-2584137)
chr6 (20-91)||(2678895-2678966)
chr6 (20-91)||(2617851-2617922)
chr6 (20-91)||(2646494-2646565)
chr6 (20-91)||(2574314-2574385)
chr6 (20-91)||(2601716-2601787)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 2447416 - 2447585
Alignment:
Q  20 acaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtgaaaagttcttaaaaaatatcattctactttatg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2447416 acaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtgaaaaggtcttaaaaaatatcattctactttatg 2447515  T
Q  120 ctatgtagcaccgacactacagatcgaagacatgtgtcagtgtctgacatgatcggtcatacaccaacac 189  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  2447516 ctatgtagcaccgacactacagatcgaagacatatgtcagtgtttgacatgatcggtcatacaccaacac 2447585  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 2431340 - 2431407
Alignment:
Q  20 acaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtga 87  Q
    ||||||| | |||| |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||    
T  2431340 acaagcacaacagatgtcatcaccagtgtatctagtgacagcctagtaattcaagatgttcttagtga 2431407  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 2584066 - 2584137
Alignment:
Q  20 acaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtgaaaag 91  Q
    ||||||| ||||||||||||||| | ||||||||  |||| |||| ||||||||||||| ||||||||||||    
T  2584066 acaagcacatcagaagtcatcacaagtgtctctaacgacatcctagtaattcaagatgttcttagtgaaaag 2584137  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 2678966 - 2678895
Alignment:
Q  20 acaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtgaaaag 91  Q
    ||||||| ||||||||||||||| | ||||||||  ||||||||| | ||||||||||| ||||||||||||    
T  2678966 acaagcacatcagaagtcatcacaagtgtctctaacgacagcctagtgattcaagatgttcttagtgaaaag 2678895  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 2617851 - 2617922
Alignment:
Q  20 acaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtgaaaag 91  Q
    ||||||| ||||||||||||||| | |||||| |  |||| |||| ||||||||||||| ||||||||||||    
T  2617851 acaagcacatcagaagtcatcacaagtgtctcaaacgacatcctagtaattcaagatgttcttagtgaaaag 2617922  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 2646565 - 2646494
Alignment:
Q  20 acaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtgaaaag 91  Q
    ||||||| ||||||||||||||||| ||||||||  ||||| ||  |||||||||| || ||||||||||||    
T  2646565 acaagcacatcagaagtcatcaccagtgtctctaacgacagtctggtaattcaagacgttcttagtgaaaag 2646494  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 2574385 - 2574314
Alignment:
Q  20 acaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtgaaaag 91  Q
    ||||||| ||||||||||||||||| |||||| | ||| |||||  |||||||||||||  |||| ||||||    
T  2574385 acaagcacatcagaagtcatcaccagtgtctccaatgatagcctcgtaattcaagatgttattagcgaaaag 2574314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 2601787 - 2601716
Alignment:
Q  20 acaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtgaaaag 91  Q
    ||||||| ||||||||||||||||| |||||| | ||| |||||  |||||||||||||  |||| ||||||    
T  2601787 acaagcacatcagaagtcatcaccagtgtctccaatgatagcctggtaattcaagatgttattagcgaaaag 2601716  T

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