View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9804_low_3 (Length: 451)

Name: NF9804_low_3
Description: NF9804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9804_low_3
NF9804_low_3
[»] chr2 (1 HSPs)
chr2 (18-444)||(5459758-5460184)
[»] chr8 (2 HSPs)
chr8 (23-444)||(36331762-36332183)
chr8 (23-444)||(36324501-36324922)


Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 5459758 - 5460184
Alignment:
Q  18 acaccatggacacaaaagtcaccaaacattttcacatcccacccgcatccctcccattcatcccaatcatgttcttaatcattcttgtacctatctacga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5459758 acaccatggacacaaaagtcaccaaacattttcacatcccacccgcatccctcccattcatcccaatcatgttcttaatcattctcgtacctatctacga 5459857  T
Q  118 ccgcattttcgttcctgttatacgtaaattcaccggtattccaaccggtgttacacacttgcaacgtataggtgttggtcttatacttgcttccgtatca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5459858 ccgcattttcgttcctgttatacgtaaattcaccggtattccaaccggtgttacacacttgcaacgtataggtgttggtcttatacttgcttccgtatca 5459957  T
Q  218 atggctgttgcttcaattatagaagtaaaaagaaaaagagtggccaatgacaataacatgcttgatgctttaccagtatatcagccattgcctataagca 317  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5459958 atggctgtcgcttcaattatagaagtaaaaagaaaaagagtggccaatgacaataacatgcttgatgctttaccagtatatcagccattgcctataagca 5460057  T
Q  318 cattttggctttcttttcagtatttcatatttggcatagctgacatattcacctatattggtctccttcaatttttctattcagaggcaccaaaaggact 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5460058 cattttggctttcttttcagtatttcatatttggcatagctgacatattcacctatattggtctccttcagtttttctattcagaggcaccaaaaggact 5460157  T
Q  418 taaatctacatcaacttgcttcctttg 444  Q
    |||||||||||||||||||||||||||    
T  5460158 taaatctacatcaacttgcttcctttg 5460184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 23 - 444
Target Start/End: Original strand, 36331762 - 36332183
Alignment:
Q  23 atggacacaaaagtcaccaaacattttcacatcccacccgcatccctcccattcatcccaatcatgttcttaatcattcttgtacctatctacgaccgca 122  Q
    |||||||||| | |||||||||||||  ||||||||||  ||||| | ||| ||||||||||    |||||| ||||| |  | ||| |||||||||| |    
T  36331762 atggacacaagaatcaccaaacatttcaacatcccaccaccatccttgccaatcatcccaattggtttcttagtcattatcatccctgtctacgaccgaa 36331861  T
Q  123 ttttcgttcctgttatacgtaaattcaccggtattccaaccggtgttacacacttgcaacgtataggtgttggtcttatacttgcttccgtatcaatggc 222  Q
    | | ||| || ||| | |||||||||||||| || |||||||| || || ||| |||| || |||||||| || || |||||  | | | | || |||||    
T  36331862 tatgcgtgccagttcttcgtaaattcaccggcataccaaccggagtcacgcacctgcagcgcataggtgtcggcctaatactatcctgcatctcgatggc 36331961  T
Q  223 tgttgcttcaattatagaagtaaaaagaaaaagagtggccaatgacaataacatgcttgatgctttaccagtatatcagccattgcctataagcacattt 322  Q
      ||||  |||| |||||||| ||||||||||  || || |  ||||||||||||||||||||| | |||| |  ||| ||||| ||| | || | ||||    
T  36331962 aattgcagcaatcatagaagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgctgttccaggagttcaaccattacctttgagtatattt 36332061  T
Q  323 tggctttcttttcagtatttcatatttggcatagctgacatattcacctatattggtctccttcaatttttctattcagaggcaccaaaaggacttaaat 422  Q
    ||||||||||||||||| ||  | ||||| |||||||| || || |||||| | || || ||| | || ||||||||||||||||||||||| |||||||    
T  36332062 tggctttcttttcagtactttgtgtttggtatagctgatatgtttacctatgtgggacttcttgagttcttctattcagaggcaccaaaagggcttaaat 36332161  T
Q  423 ctacatcaacttgcttcctttg 444  Q
    |||||||||| |||||||||||    
T  36332162 ctacatcaacatgcttcctttg 36332183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 444
Target Start/End: Original strand, 36324501 - 36324922
Alignment:
Q  23 atggacacaaaagtcaccaaacattttcacatcccacccgcatccctcccattcatcccaatcatgttcttaatcattcttgtacctatctacgaccgca 122  Q
    |||||||||| | |||||||||||||  |||||||||| |||||| | ||| |||||||| |  | ||||||||| || |  | ||| |||||||||| |    
T  36324501 atggacacaagaatcaccaaacatttcaacatcccaccagcatccttaccaatcatcccagttgttttcttaatctttataatccctttctacgaccgaa 36324600  T
Q  123 ttttcgttcctgttatacgtaaattcaccggtattccaaccggtgttacacacttgcaacgtataggtgttggtcttatacttgcttccgtatcaatggc 222  Q
    | | ||| ||  || | ||||||||||| || || ||||||||  |||| |||||||| || ||||| ||||| || |||||  | | | | || |||||    
T  36324601 tctgcgtgccacttctccgtaaattcactggcataccaaccggcattactcacttgcagcgaataggcgttggcctaatactatcctgcatctcgatggc 36324700  T
Q  223 tgttgcttcaattatagaagtaaaaagaaaaagagtggccaatgacaataacatgcttgatgctttaccagtatatcagccattgcctataagcacattt 322  Q
      | ||  |||| |||||||| ||||||||||  || || |  || |||||||||||||||||| | |||| |  ||| ||||| ||| | || | ||||    
T  36324701 aatcgcggcaatcatagaagtgaaaagaaaaaatgtagctagagataataacatgcttgatgctgttccaggagttcaaccattacctttgagtatattt 36324800  T
Q  323 tggctttcttttcagtatttcatatttggcatagctgacatattcacctatattggtctccttcaatttttctattcagaggcaccaaaaggacttaaat 422  Q
    ||||||||||||||||| ||  ||||||| |||||||| || || |||||| | || || ||| | || ||||||||||| ||||||||||| |||||||    
T  36324801 tggctttcttttcagtactttgtatttggtatagctgatatgtttacctatgtgggacttcttgagttcttctattcagaagcaccaaaagggcttaaat 36324900  T
Q  423 ctacatcaacttgcttcctttg 444  Q
    |||| ||||| ||||| |||||    
T  36324901 ctacttcaacatgctttctttg 36324922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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