View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9804_low_4 (Length: 432)
Name: NF9804_low_4
Description: NF9804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9804_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 43417147 - 43416718
Alignment:
| Q |
1 |
tactatgggtgcttctgtattcaggttggctatgcatactgttgcactgcatgtagaattgtcatggcacttacagcctaggacctgagtgtagcattta |
100 |
Q |
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| T |
43417147 |
tactatgggtgcttctgtattcaggttggctatgcatactgttgcactgcatgtagaattgtcatggcacttacagcctaggacctgagtgtagcattta |
43417048 |
T |
|
| Q |
101 |
tatttgaccaatatgtgacatgtattatgggatattatttaagttaatcatgtatgccaacaaattaattagtcagcaacaagtcaaaatataaatggtt |
200 |
Q |
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| T |
43417047 |
tatttgaccaatatgtgacatgtattatgggatattatttaagttaatcatgtatgccaacaaattaattagtcagcaacaagtcaaaatataaatggtt |
43416948 |
T |
|
| Q |
201 |
cacgaagtttatttgaaaaccttattattattgcctaaactaaaggaatggtaagagtacaatttttcgtaggatgaattataactcattatggtaaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43416947 |
cacgaagtttatttgaaaaccttattattattgcctaaactaaaggaatggtaagagtacaatttttcgtaggatgaattataactcattatggtaaatt |
43416848 |
T |
|
| Q |
301 |
gatttcaacgg--ggggtcttactattggtgtgtgtctacatattgatttgttgacccttttctttttacttggtctggcagtggaatcacacttacaaa |
398 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43416847 |
gatttcaacggggggggtcttactattggtgtgtgtctacatattgatttgttgacccttttctttttacttggtctggcagtggaatcacacttacaaa |
43416748 |
T |
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| Q |
399 |
attagttggagttctggtcctttgcttctc |
428 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43416747 |
attagttggagttctggtcctttgcttctc |
43416718 |
T |
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