View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9804_low_5 (Length: 431)

Name: NF9804_low_5
Description: NF9804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9804_low_5
NF9804_low_5
[»] chr3 (16 HSPs)
chr3 (17-420)||(4142649-4143051)
chr3 (17-420)||(4158459-4158861)
chr3 (104-361)||(3753781-3754037)
chr3 (234-358)||(3745168-3745292)
chr3 (261-358)||(967869-967966)
chr3 (259-310)||(803977-804028)
chr3 (237-336)||(955569-955668)
chr3 (244-303)||(988668-988727)
chr3 (38-77)||(3754085-3754124)
chr3 (244-358)||(1931892-1932006)
chr3 (245-371)||(2651151-2651277)
chr3 (227-316)||(1891770-1891859)
chr3 (234-325)||(2441220-2441311)
chr3 (234-292)||(12132320-12132378)
chr3 (246-303)||(2679178-2679235)
chr3 (246-303)||(2687085-2687142)
[»] chr5 (9 HSPs)
chr5 (191-358)||(11081379-11081546)
chr5 (234-298)||(23764985-23765049)
chr5 (234-298)||(23814833-23814897)
chr5 (231-358)||(1428479-1428606)
chr5 (234-298)||(23691219-23691283)
chr5 (234-298)||(23754764-23754828)
chr5 (234-298)||(23774798-23774862)
chr5 (234-298)||(23820219-23820283)
chr5 (234-298)||(23861751-23861815)
[»] chr8 (2 HSPs)
chr8 (244-358)||(19727117-19727231)
chr8 (246-298)||(31145145-31145197)
[»] chr1 (2 HSPs)
chr1 (237-334)||(25611730-25611830)
chr1 (261-310)||(23896907-23896956)
[»] chr4 (2 HSPs)
chr4 (234-283)||(22672867-22672916)
chr4 (246-356)||(20020530-20020640)


Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Original strand, 4142649 - 4143051
Alignment:
Q  17 ataactaagcttgtatattcgttgtctgcaatacacacaatgccgttacaagagccaatgaagcgataaaacttggcataaggccaatcagattgtgtga 116  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142649 ataactaagcttgtatattcgttgtctgcaagacacacaatgccgttgcaagagccaatgaagcgataaaacttggcataaggccaatcagattgtgtga 4142748  T
Q  117 agttagaggttatgtctgtgaaatcagagtccagtcggtaagatgtgagaatgtactttctttgagtcataggcgtagtttcggaagtggaggttccgag 216  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4142749 agttagaggttatgtctgtgaaatcagagtccagtggataagatgtgagaatgtactttctt-gagtcataggcgtagtttcggaagtggaggttccgag 4142847  T
Q  217 tggtggacacacggagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaactttactgg 316  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4142848 tggtggacacacagagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaactttactgg 4142947  T
Q  317 tagcctacatatgatttctggaatgacgtcggaaggaagagttgggagaggcggtagctcgtgaagtgaatcgcagacacgatgcaattttttatcatgc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||||||||||||| |    
T  4142948 tagcctacatatgatttctggaatgacgtcggaaggaagagttgggaaaggcagtagctcgtgaagtgaatagcagacaagatgcaattttttatcattc 4143047  T
Q  417 ctat 420  Q
    ||||    
T  4143048 ctat 4143051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Original strand, 4158459 - 4158861
Alignment:
Q  17 ataactaagcttgtatattcgttgtctgcaatacacacaatgccgttacaagagccaatgaagcgataaaacttggcataaggccaatcagattgtgtga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4158459 ataactaagcttgtatattcgttgtctgcaatacacacaatgccgttgcaagaaccaatgaagcgataaaacttggcataaggccaatcagattgtgtga 4158558  T
Q  117 agttagaggttatgtctgtgaaatcagagtccagtcggtaagatgtgagaatgtactttctttgagtcataggcgtagtttcggaagtggaggttccgag 216  Q
    |||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  4158559 agttagagtttatgtctgtgaaatcagagtcgagtgggtaagatgtgagaatgtactttctt-gagtcataggcatagtttaggaagtggaggttccgag 4158657  T
Q  217 tggtggacacacggagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaactttactgg 316  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||| ||    
T  4158658 tggtggacacacagagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacattggaatcggaggatgaactttaccgg 4158757  T
Q  317 tagcctacatatgatttctggaatgacgtcggaaggaagagttgggagaggcggtagctcgtgaagtgaatcgcagacacgatgcaattttttatcatgc 416  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4158758 tagcctacatatgatttctagaatgacgtcggaaggaagagttgggagaggcggtagctcgtgaagtgaatcgcagacacgatgccattttttatcatgc 4158857  T
Q  417 ctat 420  Q
    ||||    
T  4158858 ctat 4158861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 104 - 361
Target Start/End: Complemental strand, 3754037 - 3753781
Alignment:
Q  104 tcagattgtgtgaagttagaggttatgtctgtgaaatcagagtccagtcggtaagatgtgagaatgtactttctttgagtcataggc-gtagtttcggaa 202  Q
    ||||||||| ||||||||||||||||||||||||||  |||||| | | | |||||||||||||| |||||  | |||  ||  ||| ||||||| ||||    
T  3754037 tcagattgtatgaagttagaggttatgtctgtgaaaatagagtcgattggataagatgtgagaatatacttg-tgtgac-caacggctgtagtttaggaa 3753940  T
Q  203 gtggaggttccgagtggtggacacacggagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaagg 302  Q
    ||||||||||| || | ||||||||| |||||| |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| |||||    
T  3753939 gtggaggttccaagcgatggacacactgagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaagg 3753840  T
Q  303 atgaactttactggtagcctacatatgatttctggaatgacgtcggaaggaagagttgg 361  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||| |||||||||||||    
T  3753839 atgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagttgg 3753781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 234 - 358
Target Start/End: Complemental strand, 3745292 - 3745168
Alignment:
Q  234 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaactttactggtagcctacatatgattt 333  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||    
T  3745292 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaacttcaccggtagcctacataagattt 3745193  T
Q  334 ctggaatgacgtcggaaggaagagt 358  Q
    |||||||||||||||||||||||||    
T  3745192 ctggaatgacgtcggaaggaagagt 3745168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 358
Target Start/End: Complemental strand, 967966 - 967869
Alignment:
Q  261 attagagaattccatgacttgcaaacacatcggaattgaaggatgaactttactggtagcctacatatgatttctggaatgacgtcggaaggaagagt 358  Q
    |||||||||||||| |||||||| |||||||||||||| | || || |||||| | |||||||||||  |||||||||||||  ||| ||||||||||    
T  967966 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagagt 967869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 803977 - 804028
Alignment:
Q  259 atattagagaattccatgacttgcaaacacatcggaattgaaggatgaactt 310  Q
    |||||||||||||||||||||||||||| ||||||| |||||| | ||||||    
T  803977 atattagagaattccatgacttgcaaacgcatcggagttgaagtaagaactt 804028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 336
Target Start/End: Complemental strand, 955668 - 955569
Alignment:
Q  237 ttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaactttactggtagcctacatatgatttctg 336  Q
    |||||| |||| |||| |||||| || ||||||||||| ||||| ||||| ||||| | |||||||| || ||||||  |||||||||| | ||||||||    
T  955668 ttcttggcgaagttggaatcagagataagagaattccaagacttacaaacgcatcgaagttgaaggaggagctttacctgtagcctacagaggatttctg 955569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 988727 - 988668
Alignment:
Q  244 cgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaagga 303  Q
    |||||||||||||||| |||| |||||||||||||||||||   ||||||| ||||||||    
T  988727 cgaatttgggatcagagattaaagaattccatgacttgcaagagcatcggagttgaagga 988668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 3754124 - 3754085
Alignment:
Q  38 ttgtctgcaatacacacaatgccgttacaagagccaatga 77  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  3754124 ttgtctgcaatacacacaatgccgttgcaagagccaatga 3754085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 358
Target Start/End: Original strand, 1931892 - 1932006
Alignment:
Q  244 cgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaactttactggtagcctacatatgatttctggaatgac 343  Q
    |||||||||| ||||| |||||||||||| ||||||||||||| || ||||||   |  | || ||| || | ||||||||| | ||||||||||||||     
T  1931892 cgaatttggggtcagagattagagaattctatgacttgcaaacgcaccggaatctcacaaggagcttcacggatagcctacagaggatttctggaatgag 1931991  T
Q  344 gtcggaaggaagagt 358  Q
     ||| ||||||||||    
T  1931992 atcgaaaggaagagt 1932006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 371
Target Start/End: Original strand, 2651151 - 2651277
Alignment:
Q  245 gaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaactttactggtagcctacatatgatttctggaatgacg 344  Q
    ||||||| |||| || || ||||||||||||| |||||| |||||||| | ||||| || || |||||| |||| ||||| ||  |||||| |||| | |    
T  2651151 gaatttgtgatcggagataagagaattccatggcttgcagacacatcgaagttgaaagaggagctttaccggtaacctacgtagaatttcttgaataagg 2651250  T
Q  345 tcggaaggaagagttgggagaggcggt 371  Q
    ||| |||||||||| || || ||||||    
T  2651251 tcgaaaggaagagtgggcagtggcggt 2651277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 1891770 - 1891859
Alignment:
Q  227 acggagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaactttactgg 316  Q
    |||||| || ||| || |||| |||| ||| || ||||||||||||||||||||||| ||| |||||| |||||||| || ||| |||||    
T  1891770 acggaggtgtttcatggcgaacttggaatcggagattagagaattccatgacttgcagacagatcggagttgaaggaggagcttcactgg 1891859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 325
Target Start/End: Complemental strand, 2441311 - 2441220
Alignment:
Q  234 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaactttactggtagcctaca 325  Q
    ||||||||| |||||||| |||| |  |||| |||||||||||||||||| |  |||||||  ||||||| || ||| || |||||||||||    
T  2441311 tgcttcttggcgaatttgtgatcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcacaggtagcctaca 2441220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 12132378 - 12132320
Alignment:
Q  234 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcg 292  Q
    ||||||||| | ||||||||||||||||| ||||||||||| || ||||| || |||||    
T  12132378 tgcttcttggcaaatttgggatcagatatgagagaattccaggatttgcatacgcatcg 12132320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 2679178 - 2679235
Alignment:
Q  246 aatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaagga 303  Q
    ||||| ||||| || || ||||| |||||||||||||| |||||||||| ||||||||    
T  2679178 aattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaagga 2679235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 2687085 - 2687142
Alignment:
Q  246 aatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaagga 303  Q
    ||||| ||||| || || ||||| |||||||||||||| |||||||||| ||||||||    
T  2687085 aattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaagga 2687142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 191 - 358
Target Start/End: Complemental strand, 11081546 - 11081379
Alignment:
Q  191 gtagtttcggaagtggaggttccgagtggtggacacacggagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacat 290  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||| || |||||||||||||||    
T  11081546 gtagtttaggaagtggaggtttcgagtggcggacacacggagttgtttcttgacgaatttgggatcagatattaaagaatttcacgacttgcaaacacat 11081447  T
Q  291 cggaattgaaggatgaactttactggtagcctacatatgatttctggaatgacgtcggaaggaagagt 358  Q
     ||||| ||||||||||||| || |||| |||||||| ||||||| ||||||  ||||||||||||||    
T  11081446 tggaatcgaaggatgaacttaaccggtaacctacataggatttctagaatgagatcggaaggaagagt 11081379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 23764985 - 23765049
Alignment:
Q  234 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattg 298  Q
    ||||||||| |||||||||||||||| ||||||||||||||  ||||||| |||||||| |||||    
T  23764985 tgcttcttggcgaatttgggatcagaaattagagaattccaccacttgcacacacatcgaaattg 23765049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 23814833 - 23814897
Alignment:
Q  234 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattg 298  Q
    ||||||||| |||||||||||||||| ||||||||||||||  ||||||| |||||||| |||||    
T  23814833 tgcttcttggcgaatttgggatcagaaattagagaattccaccacttgcacacacatcgaaattg 23814897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 358
Target Start/End: Original strand, 1428479 - 1428606
Alignment:
Q  231 agttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaactttactggtagcctacatatga 330  Q
    |||||||||||| |||||||| ||||||  ||||||||||| |||| ||||||||  ||||||| |||||||| ||  || || |||||||||   | ||    
T  1428479 agttgcttcttggcgaatttgagatcagtgattagagaattacatgccttgcaaaggcatcggagttgaaggaggagtttcacgggtagcctatggagga 1428578  T
Q  331 tttctggaatgacgtcggaaggaagagt 358  Q
    ||| || ||||| |||| ||||||||||    
T  1428579 tttgtgaaatgatgtcgaaaggaagagt 1428606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 23691283 - 23691219
Alignment:
Q  234 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattg 298  Q
    ||||||||| |||||||||||||||| ||||||||||||||   |||||| |||||||| |||||    
T  23691283 tgcttcttggcgaatttgggatcagaaattagagaattccacagcttgcacacacatcgaaattg 23691219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 23754764 - 23754828
Alignment:
Q  234 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattg 298  Q
    ||||||||| |||| ||||||||||| ||||||||||||||  ||||||| |||||||| |||||    
T  23754764 tgcttcttggcgaacttgggatcagaaattagagaattccaccacttgcacacacatcgaaattg 23754828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 23774798 - 23774862
Alignment:
Q  234 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattg 298  Q
    ||||||||| |||| ||||||||||| ||||||||||||||  ||||||| |||||||| |||||    
T  23774798 tgcttcttggcgaacttgggatcagaaattagagaattccaccacttgcacacacatcgaaattg 23774862  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 23820219 - 23820283
Alignment:
Q  234 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattg 298  Q
    ||||||||| |||| ||||||||||| ||||||||||||||  ||||||| |||||||| |||||    
T  23820219 tgcttcttggcgaacttgggatcagaaattagagaattccaccacttgcacacacatcgaaattg 23820283  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 23861751 - 23861815
Alignment:
Q  234 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattg 298  Q
    ||||||||| |||| ||||||||||| ||||||||||||||  ||||||| |||||||| |||||    
T  23861751 tgcttcttggcgaacttgggatcagaaattagagaattccaccacttgcacacacatcgaaattg 23861815  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 358
Target Start/End: Complemental strand, 19727231 - 19727117
Alignment:
Q  244 cgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaactttactggtagcctacatatgatttctggaatgac 343  Q
    |||||||| ||||||| |||||||||||| | |||||||||||||||||||| || | || ||| || || |||||||||| ||  |||||||||||||     
T  19727231 cgaatttgtgatcagagattagagaattcaacgacttgcaaacacatcggaactgcaagaggaatttcacgggtagcctacttagaatttctggaatgag 19727132  T
Q  344 gtcggaaggaagagt 358  Q
     ||| ||||||||||    
T  19727131 atcgaaaggaagagt 19727117  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 31145145 - 31145197
Alignment:
Q  246 aatttgggatcagatattagagaattccatgacttgcaaacacatcggaattg 298  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  31145145 aatttgggatcagatataagagaattccatgacttgcaaacacactggaattg 31145197  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 334
Target Start/End: Original strand, 25611730 - 25611830
Alignment:
Q  237 ttcttgacgaatttgggatca---gatattagagaattccatgacttgcaaacacatcggaattgaaggatgaactttactggtagcctacatatgattt 333  Q
    |||||||| || |||||||||   |||||||||||||||||||||||||| || || | ||||||||||| |||||| || || |||||||| | |||||    
T  25611730 ttcttgacaaaattgggatcattcgatattagagaattccatgacttgcagacgcaacagaattgaaggaggaacttgaccgggagcctacaaaggattt 25611829  T
Q  334 c 334  Q
    |    
T  25611830 c 25611830  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 23896907 - 23896956
Alignment:
Q  261 attagagaattccatgacttgcaaacacatcggaattgaaggatgaactt 310  Q
    ||||||||||||||||||||||| || || |||||||| |||| ||||||    
T  23896907 attagagaattccatgacttgcagacgcagcggaattgtaggaggaactt 23896956  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 22672867 - 22672916
Alignment:
Q  234 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgca 283  Q
    ||||||||  |||||||| ||||||| |||||||||||||||||||||||    
T  22672867 tgcttcttagcgaatttgcgatcagagattagagaattccatgacttgca 22672916  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 356
Target Start/End: Original strand, 20020530 - 20020640
Alignment:
Q  246 aatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaactttactggtagcctacatatgatttctggaatgacgt 345  Q
    ||||| |||| ||| || |||||||||||||| || || |||||||| | |||||||| || ||| ||||||| |||||| |  ||||||  ||||| ||    
T  20020530 aatttaggatgagagatgagagaattccatgaattacatacacatcgaagttgaaggaggagcttcactggtaacctacacagaatttcttcaatgaggt 20020629  T
Q  346 cggaaggaaga 356  Q
    || ||||||||    
T  20020630 cgaaaggaaga 20020640  T

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