View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9804_low_6 (Length: 414)
Name: NF9804_low_6
Description: NF9804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9804_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Original strand, 31220506 - 31220904
Alignment:
| Q |
16 |
catcagacaggtaaagccatgtgaattgatccagccaatatccaaaattcagccacaagagcttccaagatgttttccaaattcacatgaatcaaaaggt |
115 |
Q |
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| T |
31220506 |
catcagacaggtaaagccatgtgaattgatccagccaatatccaaaattcagccacaagagtttccaagatgttttccaaattcacatgaatcaaaaggt |
31220605 |
T |
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| Q |
116 |
tactcttttttctatggcccaactcttatgtgatagttggccagtctattaaataagataatgactgacagactagagtagtttaacagagcagagtgaa |
215 |
Q |
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| T |
31220606 |
tactcttttttctatggcccaacttttatgtgatagttggccagtctattaaataagataatgactaacagattagagtagtttaacagagcagagtgaa |
31220705 |
T |
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| Q |
216 |
caattggtcaactccaaacccaaaatggaatataagaaatnnnnnnntgaaatgccattatcaattttcagactttctagcgtcaaatcacaattaggat |
315 |
Q |
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| T |
31220706 |
caattggtcaactccaaacccaaaatggaatataagaaataagaaaatgagatgccattatcaattttcagactttctagcgtcaaatcacaattaggat |
31220805 |
T |
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| Q |
316 |
aagtacaatttgacagttattaatcccattctccacatgaaatccatcctataagtacttgcaatataaaaacatgtagaagagtaaactgtatctgca |
414 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31220806 |
aagtacaatttgacaattattaatcccattctccacatgaaatccatcctataagtacttgcaatataaaaacatgtagaagactaaactgtatctgca |
31220904 |
T |
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