View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9804_low_7 (Length: 389)
Name: NF9804_low_7
Description: NF9804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9804_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 62 - 373
Target Start/End: Original strand, 28330688 - 28331003
Alignment:
| Q |
62 |
tatgtatgttatttctaaagtaattttcacttttcatttgtgataataaaaatacatcaatagtcaataaggataatgtaatnnnnnnnntaaaatcttt |
161 |
Q |
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| T |
28330688 |
tatgtatgttattttcaaagtaattttcacttttcatttgtgataataaaaatacatcaatagtcaataaggataatttaataaataa---aaaatcttt |
28330784 |
T |
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| Q |
162 |
catttatcannnnnnn-cttaagttgtgtgaaatagttaaat------attattattgtgagagatgaagtatttgaaaaattattgtaattcgttgact |
254 |
Q |
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| T |
28330785 |
tatttatcattttttttcttaagttgtgtgaaatagttaaatgcgattattattattgtgagagatgaagtatttcaaaaattattgtaattcgttgact |
28330884 |
T |
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| Q |
255 |
ctacannnnnnnnaaactgaaaatgtataaaaatgaatttcttatagtttatgaaatttaataatttgaaaagcaaaactaaccagaaacagatgcacca |
354 |
Q |
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| T |
28330885 |
ctacattttttttaaactgaaaatgtataaaaatgaatttcttatagtttatgaaatttaattatttgaaaagcaaaactaaccagaaacagatgcacca |
28330984 |
T |
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| Q |
355 |
tctcattgcgggtcaattc |
373 |
Q |
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| T |
28330985 |
tctcattgcgggtcaattc |
28331003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 373
Target Start/End: Original strand, 28296409 - 28296459
Alignment:
| Q |
323 |
aaaagcaaaactaaccagaaacagatgcaccatctcattgcgggtcaattc |
373 |
Q |
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| T |
28296409 |
aaaagcaacactaaccagaaaaagatgcaccatctcattgcggctcaattc |
28296459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 373
Target Start/End: Original strand, 28320477 - 28320527
Alignment:
| Q |
323 |
aaaagcaaaactaaccagaaacagatgcaccatctcattgcgggtcaattc |
373 |
Q |
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|||| ||| |||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
28320477 |
aaaatcaacactaaccagaaacagatgcaccatctcactgcggctcaattc |
28320527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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