View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9805_high_2 (Length: 392)
Name: NF9805_high_2
Description: NF9805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9805_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 30977002 - 30976631
Alignment:
| Q |
18 |
aagaacctctcccaccaactcaaatccaattggccggaaggcgctgtgtatacataaccttttgtatcgccacaatccagctgcatctttgacaactgag |
117 |
Q |
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| T |
30977002 |
aagaacctctcccaccaactcaaatccaattggccggaaggcgctgtgtatacataaccttttgtatcgccacaatccagctgcatctttgacaactgag |
30976903 |
T |
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| Q |
118 |
gataacaagctagaatgctcaaaccaaattcgcgcactgccggtttgggctgtcctctgcaatctccttcgacttttatacgaatctcttctagattggg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30976902 |
gataacaagctagaatgctcaaaccaaattcgcgcactgccggtttgggctgtcctctgcaatctccttcgacttttatacgaatctcttctagattggg |
30976803 |
T |
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| Q |
218 |
gcaatcctccaaccctgctactggcaactgagtcaaaagttcaccaacctttatccaaagagaaagatactccaacctatcccagctatagccatagtat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30976802 |
gcaatcctccaaccctgctactggcaactgagtcaaaagttcaccaacctttatccaaagagaaagatactccaacctatcccagctatagccatagtat |
30976703 |
T |
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| Q |
318 |
ccattgccgttacca------ttgctttgcacaaacaaatcatcagcctccaatccatactcacacctttgc |
383 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30976702 |
ccattgccgttaccattgccattgctttgcacaaacaaatcatcagcctccaatccatactcacacctttgc |
30976631 |
T |
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