View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9805_high_5 (Length: 327)

Name: NF9805_high_5
Description: NF9805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9805_high_5
NF9805_high_5
[»] chr4 (1 HSPs)
chr4 (1-310)||(27692642-27692951)
[»] chr1 (11 HSPs)
chr1 (31-175)||(9464469-9464613)
chr1 (31-169)||(8921053-8921191)
chr1 (31-171)||(8942372-8942512)
chr1 (31-171)||(8964867-8965007)
chr1 (31-171)||(9104606-9104746)
chr1 (31-167)||(9488909-9489045)
chr1 (31-92)||(9233674-9233735)
chr1 (51-158)||(8873703-8873810)
chr1 (31-169)||(8932458-8932596)
chr1 (32-110)||(8956439-8956517)
chr1 (31-171)||(9320257-9320397)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 27692951 - 27692642
Alignment:
Q  1 gctgttaaggtattgaataagtctcaaaccaatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactgg 100  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27692951 gctgttaaggtattgaccaagtctcaaaccaatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaacgtggtgcaactgg 27692852  T
Q  101 ttggattttgtgccgaaagaacaaagcaagctctggtttacgagttcatgcctaatggttctcttgataaacacacgttttcacaagagcaaggacactt 200  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  27692851 ttggattctgtgctgaaagaacaaagcaagctctggtttacgagttcatgcctaatggttctcttgataaacacatgttttcacatgagcaaggacactt 27692752  T
Q  201 gtcgtcgttaagctatgagaaaatttacgacatttctcttggaatttcccgtggaattcaatacttacatcaaggttgtgacatgcaaatcatacacttt 300  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692751 gtcgtcgttaagctacgagaaaatctacgacatttctcttggaatttcccgtggaattcaatacttacatcaaggttgtgacatgcaaatcatacacttt 27692652  T
Q  301 gatataaaac 310  Q
    ||||||||||    
T  27692651 gatataaaac 27692642  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 9464613 - 9464469
Alignment:
Q  31 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 130  Q
    |||||||| || ||||||||||||||||| ||||||||||  ||||  ||||| |||||||| || ||  |||| |||||||  || | ||||||   ||    
T  9464613 aatggacaggaattcatcaatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttgtgttgagaaaacaaaaagag 9464514  T
Q  131 ctctggtttacgagttcatgcctaatggttctcttgataaacaca 175  Q
    | || ||||| |||||||||||||| | ||||||||| |||||||    
T  9464513 cacttgtttatgagttcatgcctaacgattctcttgaaaaacaca 9464469  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 8921191 - 8921053
Alignment:
Q  31 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 130  Q
    ||||| ||||| ||||| ||||||||||||||||| |||| ||| | ||| |  |||||||||| ||| |||||||||||||  ||  || |||| |  |    
T  8921191 aatgggcaagatttcattaatgaagttgcaaccataggaaaaatacatcacgccaatgtggtgcgacttgttggattttgtgttgagggatcaaaacgtg 8921092  T
Q  131 ctctggtttacgagttcatgcctaatggttctcttgata 169  Q
    |||| ||||| || |||||||| ||||| ||||||||||    
T  8921091 ctcttgtttatgatttcatgccaaatggctctcttgata 8921053  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 171
Target Start/End: Complemental strand, 8942512 - 8942372
Alignment:
Q  31 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 130  Q
    ||||| ||||| |||||||||||||||||||| || |||||||| | |||    |||||||||| |||  ||||||||||||  ||  || ||||   ||    
T  8942512 aatgggcaagatttcatcaatgaagttgcaacaataggaagaatacatcacaccaatgtggtgcgacttattggattttgtgttgagggatcaaaaagag 8942413  T
Q  131 ctctggtttacgagttcatgcctaatggttctcttgataaa 171  Q
    |||| ||||| || |||||||| ||||| ||||||||||||    
T  8942412 ctcttgtttatgatttcatgcccaatggctctcttgataaa 8942372  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 171
Target Start/End: Complemental strand, 8965007 - 8964867
Alignment:
Q  31 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 130  Q
    ||||| || ||||| || |||||||| |||||||||||||| || | |||| |||||||||||||| |  |||| ||||||| |||  || |||| |  |    
T  8965007 aatgggcaggactttattaatgaagtagcaaccattggaaggatacatcatttgaatgtggtgcaattaattggtttttgtgtcgagggatcaaaccgtg 8964908  T
Q  131 ctctggtttacgagttcatgcctaatggttctcttgataaa 171  Q
    |||| ||||| || |||||| ||||||| || |||||||||    
T  8964907 ctcttgtttatgaattcatgtctaatggatcccttgataaa 8964867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 171
Target Start/End: Original strand, 9104606 - 9104746
Alignment:
Q  31 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 130  Q
    |||||||||||||| || | |||||| |||||||||||||| || | |||| ||||||| || ||| |  |||||||||||   ||  || |||| |  |    
T  9104606 aatggacaagactttattagtgaagtagcaaccattggaaggatacatcatttgaatgtagtacaattatttggattttgtattgagggatcaaaacgtg 9104705  T
Q  131 ctctggtttacgagttcatgcctaatggttctcttgataaa 171  Q
    |||| ||||| || |||||||||||||| ||||||||||||    
T  9104706 ctcttgtttatgaattcatgcctaatggatctcttgataaa 9104746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 9489045 - 9488909
Alignment:
Q  31 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 130  Q
    |||||||| || ||||||||||||||||| || |||||||  ||||  ||||| || ||||| || ||  |||| |||||||  || | ||||||   ||    
T  9489045 aatggacaggaattcatcaatgaagttgctacgattggaacgattcaccatgttaacgtggttcacctaattggcttttgtgttgagaaaacaaaaagag 9488946  T
Q  131 ctctggtttacgagttcatgcctaatggttctcttga 167  Q
    | || ||||| ||||||||||||||||||||||||||    
T  9488945 cacttgtttatgagttcatgcctaatggttctcttga 9488909  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 9233674 - 9233735
Alignment:
Q  31 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggt 92  Q
    ||||||||||| || ||||| |||||||| |||||||||||||| | |||||| ||||||||    
T  9233674 aatggacaagattttatcaacgaagttgcgaccattggaagaatacatcatgttaatgtggt 9233735  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 8873703 - 8873810
Alignment:
Q  51 tgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaagctctggtttacgagttcatg 150  Q
    |||||| ||||||||||| ||||| | |||| |||||||||||||| |  ||||||||||  ||||  || |||| |  ||||| ||||| ||||| |||    
T  8873703 tgaagtagcaaccattgggagaatacatcatttgaatgtggtgcaattaattggattttgcaccgagggatcaaaacgtgctcttgtttatgagtttatg 8873802  T
Q  151 cctaatgg 158  Q
    ||||||||    
T  8873803 cctaatgg 8873810  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 8932596 - 8932458
Alignment:
Q  31 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 130  Q
    ||||||||||| ||||| | |||||||||||| || |||| ||| | |||    |||||||||| ||| |||||||||||||  || | | |||| |  |    
T  8932596 aatggacaagatttcattagtgaagttgcaactataggaaaaatacatcacaccaatgtggtgcgacttgttggattttgtgttgagaaatcaaaacgtg 8932497  T
Q  131 ctctggtttacgagttcatgcctaatggttctcttgata 169  Q
    |||| ||||| || |||||||| ||||| ||||||||||    
T  8932496 ctcttgtttatgatttcatgcccaatggctctcttgata 8932458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 8956517 - 8956439
Alignment:
Q  32 atggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttg 110  Q
    |||||||||| ||||| ||||||||||||||||| |||| ||| | |||    |||||||||| ||| |||||||||||    
T  8956517 atggacaagatttcattaatgaagttgcaaccataggaaaaatacatcacaccaatgtggtgcgacttgttggattttg 8956439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 171
Target Start/End: Complemental strand, 9320397 - 9320257
Alignment:
Q  31 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 130  Q
    ||||||||||| ||||| | |||||| |||||||| |||||||| | |||    |||||||| | |||  |||| |||||||  ||| || ||||||  |    
T  9320397 aatggacaagatttcattagtgaagtcgcaaccataggaagaatacatcacaccaatgtggttcgacttattgggttttgtgttgaaggatcaaagcgtg 9320298  T
Q  131 ctctggtttacgagttcatgcctaatggttctcttgataaa 171  Q
    |||| ||||| || |||||| | ||||| ||||||||||||    
T  9320297 ctcttgtttatgaattcatgtccaatggctctcttgataaa 9320257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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