View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9805_low_1 (Length: 739)
Name: NF9805_low_1
Description: NF9805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9805_low_1 |
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| [»] scaffold0189 (2 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 276 - 737
Target Start/End: Complemental strand, 30550 - 30089
Alignment:
| Q |
276 |
tttataaaatgagtaacctgaagttgaacatcaactttaactttggaagcataagtcatcctctgtaacctagcatgtctcggaagcatcttcatctctt |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30550 |
tttataaaatgagtaacctgaagttgaacatcaactttaactttggaagcataagtcatcctctgtaacctagcatgtctcggaagcatcttcatctctt |
30451 |
T |
|
| Q |
376 |
gagcattcccttcaccacaccaaaacttaggtcgttcaagcgttacattcccaaacttaaccgtggcatattggtaatgttcatcaacagctttcttaga |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30450 |
gagcattcccttcaccacaccaaaacttaggtcgttcaagcgtaacattcccaaacttaaccgtggcatattggtaatgttcatcaacagctttcttaga |
30351 |
T |
|
| Q |
476 |
aggatcaaaacccggcgtaacagtgagatcaccgaaggaatcaaaagcggattgaagaccagaagtgatgaattgattataggagttgatttggtgactg |
575 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30350 |
aggatcaaaacccggcgtaacagtgagatcaccgaaggaatcaaaagcggattgaagaccagaagtgatgaattgattataggagttgatttggtgactg |
30251 |
T |
|
| Q |
576 |
attaaaccgtattgatcgaagaacatgacggaagcttttttgcaaaagtatttgaacatatcttcgccgagttcgttgaggatttcagcgttggatggat |
675 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30250 |
attaaaccgtattgatcgaagaacatgacggaagctcttttgcaaaagtatttgaacatatcttcgccgagttcgttgaggatttcagcgttggatggat |
30151 |
T |
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| Q |
676 |
cttcatcgttgaggtcgatgtccatttcagtgtagatgttagcgtctttgcttgaacctatg |
737 |
Q |
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| T |
30150 |
cttcatcgttgaggtcgatgtccatttcagtgtagatgttagcgtctttgcttgaacctatg |
30089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 6 - 190
Target Start/End: Complemental strand, 30820 - 30636
Alignment:
| Q |
6 |
aggaaccacaaatttcaaatcatactaacccacttttcaaaatgaacatcaaaatacacctgtaattaacacacatgcagttgtgttatttgaactataa |
105 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30820 |
aggaaacacaaatttcaaatcatactaacccacttttcaaaatgaacatcaaaatacacctgtaattaacacacatgcagttgtgttatttgaactataa |
30721 |
T |
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| Q |
106 |
aatacaaacaccacctatgtgtttatttccagctctactactatttacacacaaaaaccaaaagacacccaagtaattttcaagt |
190 |
Q |
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| T |
30720 |
aatacaaacaccacctatgtgtttatttccagctctactactatttaaacacaaaaaccaaaagacacccaagtaattttcaagt |
30636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 300 - 737
Target Start/End: Original strand, 48883162 - 48883608
Alignment:
| Q |
300 |
tgaacatcaactttaactttggaagcataagtcatcctctgtaacctagcatgtctcggaagcatcttcatctcttgagcattcccttcaccacaccaaa |
399 |
Q |
| |
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|||||||||||||| | || |||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48883162 |
tgaacatcaactttcatcttagaagcataagtcatcctctgcaacctggcatgtctgggaagcatcttcaactcttgagcattcccttcaccacaccaaa |
48883261 |
T |
|
| Q |
400 |
acttaggtcgttcaagcgttacattcccaaacttaaccgtggcatattggtaatgttcatcaacagctttcttagaaggatcaaaacccggcgtaacagt |
499 |
Q |
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|||||||||| |||||||| || ||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||| ||||||||||| |
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| T |
48883262 |
acttaggtcgctcaagcgtaaccttcccaaacttaaccgtagcataacggtaatgttcatcagcacctttcttagaaggatcaaaaccaggcgtaacagt |
48883361 |
T |
|
| Q |
500 |
gagatcaccgaaggaatcaaaagcggattgaagaccagaagtgatgaattgattataggagttgatttggtgactgattaaaccgtattgatcgaagaac |
599 |
Q |
| |
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|||||||||||||||||| |||||| ||||||||| ||| ||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48883362 |
gagatcaccgaaggaatcgaaagcgctttgaagacccgaattgatgaattgattgtacgagttgatttggtgactgattaaaccgtattggtcgaagaac |
48883461 |
T |
|
| Q |
600 |
atgacggaagcttttttgcaaaagtatttgaacatatcttcgccgagttcgttgaggatttcagcgttggatggatcttcatcgttg---aggtcgatgt |
696 |
Q |
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|| ||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||| |||||||||||| | ||||| |||| |
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| T |
48883462 |
ataacggaagctttcttgcaaaagtatttgaccatatcgtcgccgagttcgttgaggatttcggcgttggattgatcttcatcgtcgtcaaggtcaatgt |
48883561 |
T |
|
| Q |
697 |
ccatttcagtgta------gatgttagcgtctttgcttgaacctatg |
737 |
Q |
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||||||| ||||| | ||||||| |||||||||||||||||| |
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| T |
48883562 |
ccatttctgtgtagttggtgttgttagcatctttgcttgaacctatg |
48883608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 466 - 673
Target Start/End: Original strand, 53014590 - 53014798
Alignment:
| Q |
466 |
ctttcttagaaggatcaaaaccc-ggcgtaacagtgagatcaccgaaggaatcaaaagcggattgaagaccagaagtgatgaattgattataggagttga |
564 |
Q |
| |
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||||| ||||||| |||||| || |||||||| || || || || ||||||| ||||| ||||||||||||||||||||||| ||||||||| |||| |
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| T |
53014590 |
ctttcgtagaagggtcaaaaaccaggcgtaactgtaagctctccaaaggaattgaaagcattttgaagaccagaagtgatgaattaattataggaattga |
53014689 |
T |
|
| Q |
565 |
tttggtgactgattaaaccgtattgatcgaagaacatgacggaagcttttttgcaaaagtatttgaacatatcttcgccgagttcgttgaggatttcagc |
664 |
Q |
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|||||||||||||||||||||| | | |||||||| || ||||||||||||||| || ||||||| ||| ||||| || |||||||||||||||||||| |
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| T |
53014690 |
tttggtgactgattaaaccgtactcgttgaagaacacgatggaagcttttttgcagaaatatttgaccatgtcttcacctagttcgttgaggatttcagc |
53014789 |
T |
|
| Q |
665 |
gttggatgg |
673 |
Q |
| |
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|| ||||| |
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| T |
53014790 |
atttgatgg |
53014798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 48882828 - 48882986
Alignment:
| Q |
1 |
caaacaggaaccacaaatttcaaatcatactaacccacttttcaaaatgaacatcaaaatacacc-tgtaatta--acacacatgcag-ttgtgttattt |
96 |
Q |
| |
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|||| |||||| | |||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |||||||||||| ||| ||||||| |
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| T |
48882828 |
caaataggaactaaaaatttcaaatcatactaacccacatttcaaaatgaacattaaaatacaccttgtaattaacacacacatgcagtttgcgttattt |
48882927 |
T |
|
| Q |
97 |
gaactataaaatacaaacaccacctatgtgtttatttccagctctactactatttacaca |
156 |
Q |
| |
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|||| |||| |||| ||| |||||||||||||| |||||| |||||||||||||| |
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| T |
48882928 |
gaacaccaaaaaacaagcacacactatgtgtttattt-tagctcttctactatttacaca |
48882986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 340
Target Start/End: Original strand, 53014493 - 53014544
Alignment:
| Q |
289 |
taacctgaagttgaacatcaactttaactttggaagcataagtcatcctctg |
340 |
Q |
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||||||||| ||||||||||| ||| | |||||||||||| ||||||||||| |
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| T |
53014493 |
taacctgaacttgaacatcaattttgattttggaagcataggtcatcctctg |
53014544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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