View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9805_low_11 (Length: 279)
Name: NF9805_low_11
Description: NF9805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9805_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 3073595 - 3073844
Alignment:
| Q |
20 |
ttgtcgtgataaggattattcttggtcaaatgaatagcactttggctgtcacaaaacacagtaagaacaccctgtgtaagaccaagttcattgaccaaac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3073595 |
ttgtcgtgataaggattattcttggtcaaatgaatagcactttggctgtcacaaaacacagtaagaacaccctgtgtaagaccaagttcattgaccaaac |
3073694 |
T |
|
| Q |
120 |
ctcaaagccaaatagcttctttaacaccctctgttgctgaaatatattctgcttcaattgtagacaatgcagtaatagattgaagtgtagctttccagct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3073695 |
ctcaaagccaaatagcttctttaacaccctctgttgctgaaatatattctgcttcaattgtagacaatgcagtaatagattgaagtgtagctttccagct |
3073794 |
T |
|
| Q |
220 |
gatagcactattacagagagtaaagatgtaaccagaaagagatcttcttc |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3073795 |
gatagcactattacagagagtaaagatgtaaccagaaagagatcttcttc |
3073844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 23047756 - 23047509
Alignment:
| Q |
20 |
ttgtcgtgataaggattattcttggtcaaatgaatagcactttggctgtcacaaaacacagtaagaacaccctgtgtaagaccaagttcattgaccaaac |
119 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23047756 |
ttgtcgtgataacgattattcttggtcaaatgaatagcactttggctgtcacaaaatacagtaagaacaccctgtgtaagaccaagttcattgaccaaac |
23047657 |
T |
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| Q |
120 |
ctcaaagccaaatagcttctttaacaccctctgttgctgaaatatattctgcttcaattgtagacaatgcagtaatagattgaagtgtagctttccagct |
219 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23047656 |
ctcgaagccaaatagcttctttaacaccctctgttgctgaaatatattctgcttcagttgtagacaatgcagcaatagattgaagtgtagctttccagct |
23047557 |
T |
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| Q |
220 |
gatagcactattacagagagtaaagatgtaaccagaaagagatcttct |
267 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
23047556 |
gatagcactattacatagagtaaagatgtaaccagaaagagatcttct |
23047509 |
T |
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