View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9805_low_12 (Length: 269)
Name: NF9805_low_12
Description: NF9805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9805_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 43676912 - 43676663
Alignment:
| Q |
18 |
tttgtatgctactgttaggcttttacctgcttttaagatttttaaggaacttagttcatctgcaaatgtttctgcttttagtcttgctcatcgtgtttcg |
117 |
Q |
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| T |
43676912 |
tttgtatgctactgttaggcttttacctgcttttaagatttttaaggaacttagttcatctgcaaatgtttctgcttttagtcttgctcatcgtgtttcg |
43676813 |
T |
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| Q |
118 |
actttctttgaaccatttactactaaacaagaagctgaaatgcttaagtttgtgttcactcctgtggatactaattctggtaagctgtgtttatcggtga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43676812 |
actttctttgaaccatttactactaaacaagaagctgaaatgcttaagtttgtgttcactcctgtggatactaattccggtaagctgtgtttatcggtga |
43676713 |
T |
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| Q |
218 |
tgtatcgaccatgtgtttctgatgtgagttcagaaccaacgactcctttg |
267 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43676712 |
tgtatcgaccatgtgtttctgatgtgagttcggaaccaacgactcctttg |
43676663 |
T |
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