View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9805_low_4 (Length: 373)
Name: NF9805_low_4
Description: NF9805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9805_low_4 |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 3074233 - 3073861
Alignment:
| Q |
1 |
gctggtaaactatttttatctcaacaaaagtatattgagagagtgcttgataggtttaatatgaataattgtaaacctgtttctactccacttgctgcgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3074233 |
gctggtaaactatttttatctcaacaaaagtatattaaaagagtgcttgataggtttaatatgaataattgtaaacctgtttctactccacttgctgcgc |
3074134 |
T |
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| Q |
101 |
atttcaagttatcttcagaattttgcccagatacaaaggaagagatgaagcatatgtcatatgtttccttatgcatgtcatatatgcactagaccagatc |
200 |
Q |
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| T |
3074133 |
atttcaagttatcttcagaattttgcccaaatacaaaggaagagatggagcatatgtcatatgtttccttatgcatgtcatatatgcactagaccagatc |
3074034 |
T |
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| Q |
201 |
tagcatatgctgttagcatagtaagccggtatatgcataatcctggcaaaagtcactggagtgctgtaaaatggatttttcggtatctaaaaggtacttc |
300 |
Q |
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| T |
3074033 |
tagcatatgttgttagcatagtaagccggtatatgcataatcctggcaaaagtcactggagtgctgtaaaatggatttttcggtatctaaaaggtacttc |
3073934 |
T |
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| Q |
301 |
cggtattggcttggtatttgacagaaaaatggctataaccaatgatgttgcaggttatgttgactcggattat |
373 |
Q |
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| T |
3073933 |
cggtattggcttggtatttgacagaaaaatggctacaaccaatgatgttgcaggttatgttgactcggattat |
3073861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 29474393 - 29474515
Alignment:
| Q |
1 |
gctggtaaactatttttatctcaacaaaagtatattgagagagtgcttgataggtttaatatgaataattgtaaacc-tgtttctactccacttgctgcg |
99 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29474393 |
gctggtaaactattcttatctcaacaaaagtatattgagagagtgcttgataggtttaatatgaataattgtaaaccaagtttctactccacttgctgcg |
29474492 |
T |
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| Q |
100 |
catttcaagttatcttcagaatt |
122 |
Q |
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| T |
29474493 |
catttcaagttatcttcagaatt |
29474515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 183 - 373
Target Start/End: Original strand, 23047300 - 23047490
Alignment:
| Q |
183 |
tatgcactagaccagatctagcatatgctgttagcatagtaagccggtatatgcataatcctggcaaaagtcactggagtgctgtaaaatggatttttcg |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23047300 |
tatgcactagaccagatctagcatatgctgttagcatagtaagccggtatatgcataatcctggcaagagtcactggagtgctgtaaaatggatttttcg |
23047399 |
T |
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| Q |
283 |
gtatctaaaaggtacttccggtattggcttggtatttgacagaaaaatggctataaccaatgatgttgcaggttatgttgactcggattat |
373 |
Q |
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| T |
23047400 |
gtatctaaaaggtacttccggtattggcttggtttttgacagaaaaatggctacaaccaatgatgttgcaggttatgttgactcggattat |
23047490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 23047095 - 23047267
Alignment:
| Q |
1 |
gctggtaaactatttttatctcaacaaaagtatattgagagagtgcttgataggtttaatatgaataattgtaaacctgtttctactccacttgctgcgc |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23047095 |
gctggtaaactattcttatctcaacaaaagtatattgagagagtgcttgataggtttaatatgaataattgtaaacctgtttctactccacttgctgcgc |
23047194 |
T |
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| Q |
101 |
atttcaagttatcttcagaattttgcccagatacaaaggaagagatgaagcatatgtcatatgtttccttatgc |
174 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
23047195 |
atttcaagttgtcttcagaattttgcccaaatacaaaggaagagatggagcatatgtcatatg-ttccttatgc |
23047267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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