View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9805_low_6 (Length: 354)
Name: NF9805_low_6
Description: NF9805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9805_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 22 - 340
Target Start/End: Complemental strand, 5774619 - 5774304
Alignment:
| Q |
22 |
gttgaggtaactgttgttagtgtgtgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgact |
121 |
Q |
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| T |
5774619 |
gttgaggtaactgttgttagtgtatgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgact |
5774520 |
T |
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| Q |
122 |
gacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttat-nnnnnnnnttgtggaaattttgtgttatttagaatgtaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5774519 |
gacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttataaaaaggaattgtggaaattttgtgttatttagaatgtaa |
5774420 |
T |
|
| Q |
221 |
ctaatcgaatgagtaaagttatatatataatagtatttcacctaggcatttgaaaaatttctgcacacgcacatgtgcttcatctctgatttttcacctt |
320 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
5774419 |
ctaatcgaatgagtaaagt----tatataatagtatttcacctaggcatttgaaaaatttctgcacacacacatgtgcttcatctctgatttttaacctt |
5774324 |
T |
|
| Q |
321 |
tcttctttccatgatgatgt |
340 |
Q |
| |
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|||||||||||||||||||| |
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| T |
5774323 |
tcttctttccatgatgatgt |
5774304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 5768348 - 5768137
Alignment:
| Q |
22 |
gttgaggtaactgttgttagtgtgtgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgact |
121 |
Q |
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||||||||||| ||||||||||| ||||| |||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||| |
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| T |
5768348 |
gttgaggtaaccgttgttagtgtatgcgttcttgaaggaggctgaattgctggttaacgtaagatatcacgagcttgtgccagaacatcaggtgctgacc |
5768249 |
T |
|
| Q |
122 |
gacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttatnnnnnnnnttgtggaaattttgtgttatttagaatgtaac |
221 |
Q |
| |
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|||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||| || |
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| T |
5768248 |
gacaatgagaagaaaaccttactcgagagatacaccgttaaagaaactcaggtcagttataaataaaattgatgaaa--ttgtgttatttagaatgtgac |
5768151 |
T |
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| Q |
222 |
taatcgaatgagta |
235 |
Q |
| |
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|||||||||||||| |
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| T |
5768150 |
taatcgaatgagta |
5768137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 57 - 178
Target Start/End: Original strand, 465679 - 465800
Alignment:
| Q |
57 |
aggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgactgacaatgagaagaaaaccgtacttgagagatacac |
156 |
Q |
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||||||| || |||||||||||| ||| | | || ||||||||| ||||||||| | || | ||||| |||||||||||| | |||||||||||||| |
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| T |
465679 |
aggaggcagagttgctggttaatataaaagagcatgtgcttgtgcctgaacatcagattctcaatgacaccgagaagaaaaccttgcttgagagatacac |
465778 |
T |
|
| Q |
157 |
tgttaaagaaactcaggtcagt |
178 |
Q |
| |
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||| || ||||||||||||||| |
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| T |
465779 |
tgtcaaggaaactcaggtcagt |
465800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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