View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9806_high_14 (Length: 250)
Name: NF9806_high_14
Description: NF9806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9806_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 28 - 241
Target Start/End: Complemental strand, 33382223 - 33382015
Alignment:
| Q |
28 |
atacaattggaaacaaactatagctccttattgaatcattaagtttataataacttggagcatatggacaggttcaattccatgacactttctatccaat |
127 |
Q |
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| T |
33382223 |
atacaattggaaagaaa--atagctccttattgaagcattaaatttataa---cttggagcatatatacaagttcaattccatgacactttttatccaat |
33382129 |
T |
|
| Q |
128 |
tgttggaacctgagtgacaattccttctttatcaacccaaaccctaaccctgtcaaagcgtaagtcgtcggtgacaggagatccttctagcacaatgatg |
227 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| |
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| T |
33382128 |
tgttggaacctgagtcacaattccttctttatcaacccaaaccctaaccctgtcaaagcgtaagtcgtcggtgacagaagatccttctaacactatgatg |
33382029 |
T |
|
| Q |
228 |
gcattcacctatgc |
241 |
Q |
| |
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|| |||||| |||| |
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| T |
33382028 |
gctttcaccgatgc |
33382015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 33400417 - 33400280
Alignment:
| Q |
99 |
gttcaattccatgacactttctatccaattgttggaacctgagtgacaattccttctttatcaacccaaaccctaaccctgtcaaagcgtaagtcgtcgg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||||||||||||| |||||| ||| | || ||||| | |
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| T |
33400417 |
gttcaattccatgacactttctatccaattgttggaaccttaaagacaattccatctttgtcaacccaaacccaaaccctatcacaacgaaagtcaagga |
33400318 |
T |
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| Q |
199 |
tgacaggagatccttctagcacaatgatggcattcacc |
236 |
Q |
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| T |
33400317 |
tgacagcagatccttctggcacaatgatggcattcacc |
33400280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 236
Target Start/End: Complemental strand, 33356737 - 33356520
Alignment:
| Q |
28 |
atacaattggaaacaaactatagctccttattgaatcattaagtttataataacttggagcatatggacaggttcaattccatga------------cac |
115 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||| ||||||| |||||||||| | ||| ||| |||||||||| ||| |
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| T |
33356737 |
atacaattggaaagaaactatagctccttattgaaacattaaatttataa---cttggagcatgtatacaagttaaattccatgatgagtatagagacac |
33356641 |
T |
|
| Q |
116 |
tttctatccaattgttggaacctgagtgacaattccttctttatcaacccaaaccctaaccctgtcaaagcgtaagtcgtcggtgacaggagatccttct |
215 |
Q |
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|||||||||||||||||||||||| ||||||| | ||||||| || |||||||| |||||||||| |||| ||||| || ||||| |||||||||| |
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| T |
33356640 |
tttctatccaattgttggaacctggtagacaatttcatctttattaatccaaacccaaaccctgtcacagcggaagtcaaaggggacagaagatccttct |
33356541 |
T |
|
| Q |
216 |
agcacaatgatggcattcacc |
236 |
Q |
| |
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||||||||||||||| |||| |
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| T |
33356540 |
ggcacaatgatggcatccacc |
33356520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 29 - 236
Target Start/End: Original strand, 39306839 - 39307041
Alignment:
| Q |
29 |
tacaattggaaacaaactatagctccttattgaatcattaagtttataataacttggagcatatggacaggttcaattccatgacactttctatccaatt |
128 |
Q |
| |
|
|||||||||||| |||| | ||||||||||||| | |||| ||||||| |||||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
39306839 |
tacaattggaaataaacca--gctccttattgaaaccttaaatttataa---cttggagcatatattcaagttcaattccatgacactttctatccaatt |
39306933 |
T |
|
| Q |
129 |
gttggaacctgagtgacaattccttctttatcaacccaaaccctaaccctgtcaaagcgtaagtcgtcggtgacaggagatccttctagcacaatgatgg |
228 |
Q |
| |
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| ||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||| |||||||||| |||||||||||| |
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| T |
39306934 |
atcggaacctgatagacaattccatctttatcaacccaaaccctaaccctgtcacagcggaagtcggcggtgacaaaagatccttctggcacaatgatgg |
39307033 |
T |
|
| Q |
229 |
cattcacc |
236 |
Q |
| |
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|||||||| |
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|
| T |
39307034 |
cattcacc |
39307041 |
T |
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