View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9806_high_15 (Length: 250)
Name: NF9806_high_15
Description: NF9806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9806_high_15 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 22418056 - 22418285
Alignment:
| Q |
17 |
acatcatcatcatcttcatagttcatcaacccttcaaaataaaaatcatcctatgtgcctcttcaaaattaataaccatatgcatttaaacattattagg |
116 |
Q |
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| T |
22418056 |
acatcatcatcatcttcatagttcatcaacccttcaaaataaaaatcatcctatgtgcctcttcaaaattaagaaccatatgcatttaaacattactagg |
22418155 |
T |
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| Q |
117 |
tcttcaaattagagaaggattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaattgaaaagcttcaa |
216 |
Q |
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| T |
22418156 |
tcttcaaattagagtaggattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaattgaaaagcttcaa |
22418255 |
T |
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| Q |
217 |
atatcattatctctttctttgaaacccata |
246 |
Q |
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| T |
22418256 |
atatcattatctctttctttgaaacccata |
22418285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 12813220 - 12813449
Alignment:
| Q |
21 |
catcatcatcttcatagttcatcaacccttcaaaataaaaatcatcctatgtgcctcttcaaaattaataaccatatgcatttaaacattattaggtctt |
120 |
Q |
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| T |
12813220 |
catcatcatcttcatagttcatcaacccttcaaaataaaagtcatcctatgtgcctcttcaaaattaagaaccatatgcatttaaacattactaggtctt |
12813319 |
T |
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| Q |
121 |
caaattagagaaggattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaattgaaaagcttcaaatat |
220 |
Q |
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| T |
12813320 |
caaattagagaagaattgaagaaaatgaatagcttcaaaagatacaatgtttctttccaatcattctcctgcatcgacgaaattgaaaagtttcaaatat |
12813419 |
T |
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| Q |
221 |
cattatctctttctttgaaacccataaatc |
250 |
Q |
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| T |
12813420 |
cattatctctttctttgaaacccataaatc |
12813449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 14998348 - 14998427
Alignment:
| Q |
171 |
ttctttccaatcattctcctgcatcgacgaaattgaaaagcttcaaatatcattatctctttctttgaaacccataaatc |
250 |
Q |
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| T |
14998348 |
ttctttcaaatctttctcatgtatctacaaaattgaaaagcttaaaatatcattatctctttctttcaaacccagaaatc |
14998427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 14998276 - 14998326
Alignment:
| Q |
22 |
atcatcatcttcatagttcatcaacccttcaaaataaaaatcatcctatgt |
72 |
Q |
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| T |
14998276 |
atcatcatcttcataattcataaacccttcaaaataaaaatcatcttatgt |
14998326 |
T |
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