View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9806_high_2 (Length: 498)
Name: NF9806_high_2
Description: NF9806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9806_high_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 481
Target Start/End: Original strand, 27981174 - 27981640
Alignment:
| Q |
16 |
tggacatcccaaatatgtaaggggaaaacgatttcttattcattcaagttggaaatacaatagt-ggatacctatttatagcaaaagcatccaagtaact |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27981174 |
tggacatcccaaatatgtaaggggaaaacgatttgttattcattcaagttggaaatacaatagttggatacctatttatagcaaaagcatccaagtaact |
27981273 |
T |
|
| Q |
115 |
aagttagcttgctttacaagtaactgagctgaaagagaaccttgttcttacaagttagcttgcttctgagcatactcctcaccatgttcttcaaggtcct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27981274 |
aagttagcttgctttacaagtaactgagctgaaagagaactttgttcttacaagttagcttgcttctgagcatactcctcaccatgttcttcaaggtcct |
27981373 |
T |
|
| Q |
215 |
attctttctttcagtacgtaacaccattttgttgaggtgtgtaagatgcagtaagttaccttctgatttcgtttgatctacaaaattcagtgaactctgc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27981374 |
attctttctttcagtacgtaacaccattttgttgaggtgtgtaagatgcagtaagttaccttctgatttcgtttgatctacaaaattcagtgaactctgc |
27981473 |
T |
|
| Q |
315 |
agaagtatactcaccacctctatctgatcttaagcactagatcaagcaactagattccttttcaactaaactcttgaattgcttgaatacctctaatgct |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27981474 |
agaagtatactcaccacctctatctgatcttaagcactagatcaagcaactagattccttttcaactaaactcttgaattgcttgaatacctctaatgct |
27981573 |
T |
|
| Q |
415 |
cttgatttctctttcaaaatatatatccatgtttttctactgaaatcatcagtaaatgtcatgaagt |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27981574 |
cttgatttctctttcaaaatatatatccatgtttttctactaaaatcatcagtaaatgtcatgaagt |
27981640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 481
Target Start/End: Original strand, 28038476 - 28038942
Alignment:
| Q |
16 |
tggacatcccaaatatgtaaggggaaaacgatttcttattcattcaagttggaaatacaatagt-ggatacctatttatagcaaaagcatccaagtaact |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28038476 |
tggacatcccaaatatgtaaggggaaaacgatttgttattcattcaagttggaaatacaatagttggatacctatttatagcaaaagcatccaagtaact |
28038575 |
T |
|
| Q |
115 |
aagttagcttgctttacaagtaactgagctgaaagagaaccttgttcttacaagttagcttgcttctgagcatactcctcaccatgttcttcaaggtcct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28038576 |
aagttagcttgctttacaagtaactgagctgaaagagaactttgttcttacaagttagcttgcttctgagcatactcctcaccatgttcttcaaggtcct |
28038675 |
T |
|
| Q |
215 |
attctttctttcagtacgtaacaccattttgttgaggtgtgtaagatgcagtaagttaccttctgatttcgtttgatctacaaaattcagtgaactctgc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28038676 |
attctttctttcagtacgtaacaccattttgttgaggtgtgtaagatgcagtaagttaccttctgatttcgtttgatctacaaaattcagtgaactctgc |
28038775 |
T |
|
| Q |
315 |
agaagtatactcaccacctctatctgatcttaagcactagatcaagcaactagattccttttcaactaaactcttgaattgcttgaatacctctaatgct |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28038776 |
agaagtatactcaccacctctatctgatcttaagcactagatcaagcaactagattccttttcaactaaactcttgaattgcttgaatacctctaatgct |
28038875 |
T |
|
| Q |
415 |
cttgatttctctttcaaaatatatatccatgtttttctactgaaatcatcagtaaatgtcatgaagt |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28038876 |
cttgatttctctttcaaaatatatatccatgtttttctactaaaatcatcagtaaatgtcatgaagt |
28038942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 27887857 - 27887950
Alignment:
| Q |
16 |
tggacatcccaaatatgtaaggggaaaacgatttcttattcattcaagttggaaatacaatag-tggatacctatttatagcaaaagcatccaa |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
27887857 |
tggacatcccaaatatgtaaacggaaaacgatttgttattcattcaagttggaaatacaatagttggatacctatttatagcaaaagtatccaa |
27887950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 27946515 - 27946608
Alignment:
| Q |
16 |
tggacatcccaaatatgtaaggggaaaacgatttcttattcattcaagttggaaatacaatag-tggatacctatttatagcaaaagcatccaa |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
27946515 |
tggacatcccaaatatgtaaacggaaaacgatttgttattcattcaagttggaaatacaatagttggatacctatttatagcaaaagtatccaa |
27946608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 28026758 - 28026851
Alignment:
| Q |
16 |
tggacatcccaaatatgtaaggggaaaacgatttcttattcattcaagttggaaatacaatag-tggatacctatttatagcaaaagcatccaa |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
28026758 |
tggacatcccaaatatgtaaacggaaaacgatttgttattcattcaagttggaaatacaatagttggatacctatttatagcaaaagtatccaa |
28026851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 465
Target Start/End: Original strand, 40612101 - 40612150
Alignment:
| Q |
416 |
ttgatttctctttcaaaatatatatccatgtttttctactgaaatcatca |
465 |
Q |
| |
|
||||||||||||| || || ||| ||||||||||||||||||| |||||| |
|
|
| T |
40612101 |
ttgatttctcttttaatatgtatgtccatgtttttctactgaagtcatca |
40612150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 183 - 481
Target Start/End: Complemental strand, 16864486 - 16864191
Alignment:
| Q |
183 |
agcatactcctcaccatgttcttcaaggtcctattctttctttcagtacgtaacaccattttgttgaggtgtgtaagatgcagtaagttaccttctgatt |
282 |
Q |
| |
|
||||||||||| ||||||||| |||| || ||||||||||| || | | |||||||| |||||| ||||||||| || |||||||| ||||||| |
|
|
| T |
16864486 |
agcatactccttaccatgttcatcaaagttctattctttctctctgaa----acaccattgtgttgacgtgtgtaagttgtagtaagttgtattctgatc |
16864391 |
T |
|
| Q |
283 |
tcgtttgatctacaaaattcagtgaactctgcagaagtatactcaccacctctatctgatcttaagcactagatcaagcaactagattccttttcaacta |
382 |
Q |
| |
|
| ||||| || |||| | | |||||||||||||||| ||||| ||||| |||| |||||||||||||| ||||||| | ||||| ||||| |||||| |
|
|
| T |
16864390 |
ccatttgagctgtaaaacttattgaactctgcagaagtgtactctccacccctatttgatcttaagcacttgatcaaggatctagactccttctcaactg |
16864291 |
T |
|
| Q |
383 |
aactcttgaattgcttgaatacctctaatgctcttgatttctctttcaaaatatatatccatgt-ttttctactgaaatcatcagtaaatgtcatgaagt |
481 |
Q |
| |
|
|| ||||||| | |||| ||| ||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16864290 |
aattcttgaacaattcgaatgtctcaaatgcccttgatttctctttcaaaatgtatatccatgttttttctattgaaatcatcagtaaatgtcatgaagt |
16864191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 16866753 - 16866695
Alignment:
| Q |
82 |
atacctatttatagcaaaagcatccaagtaactaagttagcttgctttacaagtaactg |
140 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
16866753 |
atacctatttatagtaaaagtatccaagtaactaagttagcttgcattacaagttactg |
16866695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 7431872 - 7431928
Alignment:
| Q |
79 |
tggatacctatttatagcaaaagcatccaagtaactaagttagcttgctttacaagt |
135 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| |||||||| |||||||| |
|
|
| T |
7431872 |
tggatacctatttatagtaaaagtatccaagtaactaagctagcttgcattacaagt |
7431928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 16862508 - 16862447
Alignment:
| Q |
79 |
tggatacctatttatagcaaaagcatccaagtaactaagttagcttgctttacaagtaactg |
140 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||| |||| |
|
|
| T |
16862508 |
tggatacctatttatagtaaaagtatccaagtaactaagctagcttgtattacaagttactg |
16862447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 479
Target Start/End: Original strand, 7621327 - 7621388
Alignment:
| Q |
418 |
gatttctctttcaaaatatatatccatgtttttctactgaaatcatcagtaaatgtcatgaa |
479 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
7621327 |
gatttctctatcaatggatatgtccatgtttttctactgaaatcatcagtaaaggttatgaa |
7621388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 264 - 467
Target Start/End: Complemental strand, 20530041 - 20529838
Alignment:
| Q |
264 |
agtaagttaccttctgatttcgtttgatctacaaaattcagtgaactctgcagaagtatactcaccacctctatctgatcttaagcactagatcaagcaa |
363 |
Q |
| |
|
|||||||| ||||||||| | ||||| |||||||||||| | || |||||||||||| ||| | ||| | |||| ||||| |||| |||| || |
|
|
| T |
20530041 |
agtaagttgccttctgatcccatttgagctacaaaattcattaaaaattgcagaagtatattcatctcctatgtctggccttaaacactttatcatacat |
20529942 |
T |
|
| Q |
364 |
ctagattccttttcaactaaactcttgaattgcttgaatacctctaatgctcttgatttctctttcaaaatatatatccatgtttttctactgaaatcat |
463 |
Q |
| |
|
| |||||| || ||||| | ||||||||| |||||| | || ||||||||| | || ||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
20529941 |
ccagattctttctcaacaagactcttgaaaaccttgaacatttcaaatgctcttaacttttctttcaaagtatatgtccatgtttttctactgaaatcat |
20529842 |
T |
|
| Q |
464 |
cagt |
467 |
Q |
| |
|
|||| |
|
|
| T |
20529841 |
cagt |
20529838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 183 - 383
Target Start/End: Complemental strand, 20543439 - 20543243
Alignment:
| Q |
183 |
agcatactcctcaccatgttcttcaaggtcctattctttctttcagtacgtaacaccattttgttgaggtgtgtaagatgcagtaagttaccttctgatt |
282 |
Q |
| |
|
|||||||| || ||||| ||| |||| || ||||||||||||| | | |||||||||||| ||||||||||||| || |||| ||| ||||| |
|
|
| T |
20543439 |
agcatacttcttaccatattcatcaaagttctattctttcttt----atgaaacaccattttgctgaggtgtgtaagcaatggtcagttgtcttttgatt |
20543344 |
T |
|
| Q |
283 |
tcgtttgatctacaaaattcagtgaactctgcagaagtatactcaccacctctatctgatcttaagcactagatcaagcaactagattccttttcaacta |
382 |
Q |
| |
|
| ||||| || ||||| ||| ||||||||| |||||||||||| |||||||| |||||||||||||| | ||| || || | | |||| |||||||||| |
|
|
| T |
20543343 |
ccatttgagctgcaaaactcattgaactctgtagaagtatactctccacctctgtctgatcttaagcatttgattaaacatccatattctttttcaacta |
20543244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 8922267 - 8922206
Alignment:
| Q |
418 |
gatttctctttcaaaatatatatccatgtttttctactgaaatcatcagtaaatgtcatgaa |
479 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
8922267 |
gatttctctatcaatggatatgtccatgtttttctactgaaatcatcagtaaaggttatgaa |
8922206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 5145746 - 5145779
Alignment:
| Q |
106 |
caagtaactaagttagcttgctttacaagtaact |
139 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
5145746 |
caagtaactaagctagcttgctttacaagtaact |
5145779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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