View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9806_high_21 (Length: 226)
Name: NF9806_high_21
Description: NF9806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9806_high_21 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 7965654 - 7965879
Alignment:
| Q |
1 |
aaccacataaagaccattgacgcgctcttatcattgtacaatacccactatccagtgtagtgtatgttgttcgttttgaccctataagaaggagctatga |
100 |
Q |
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| T |
7965654 |
aaccacataaagaccattgatgcgctcttatcattccacgatacccactttccagtgtagtgtaagttgttcgttttgaccctataagaaggagctatgg |
7965753 |
T |
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| Q |
101 |
catggttcaaaagccttaaaccttgatctattgatttttggatcggactatgcaagaggttcagagctcacttcacggccttgagaaacaaccgaagtcc |
200 |
Q |
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| T |
7965754 |
catggttcaaaagccttaaaccttgatctattgatttttggatcggactatgcaagaggttaagagctcacttcacggccttgagaaacaaccgaagtcc |
7965853 |
T |
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| Q |
201 |
atagatagtttgggcacctctttttc |
226 |
Q |
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| T |
7965854 |
atagatagtttgggcacctctttttc |
7965879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 7981192 - 7981409
Alignment:
| Q |
1 |
aaccacataaagaccattgacgcgctcttatcattgtacaatacccactatccagtgtagtgtatgttgttcgttttgaccctataagaaggagctatga |
100 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
7981192 |
aaccacataaagaccattgacgcgctcttatcattccgcgatacccactgtccagtgtagtgtaagttgttcgttttgaccctataagaaagagctatgg |
7981291 |
T |
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| Q |
101 |
catggttcaaaagccttaaaccttgatctattgatttttggatcggactatgcaagaggttcagagctcacttcacggccttgagaaacaaccgaagtcc |
200 |
Q |
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| T |
7981292 |
catggttcaaaagccttaaaccttgaactattgatttttggatcggactatgcaagaggttcagtgttcacttcacggccttgagaaacaaccgaagtcc |
7981391 |
T |
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| Q |
201 |
atagatagtttgggcacc |
218 |
Q |
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| T |
7981392 |
atagatagtttgggcacc |
7981409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 41 - 218
Target Start/End: Original strand, 7975257 - 7975434
Alignment:
| Q |
41 |
atacccactatccagtgtagtgtatgttgttcgttttgaccctataagaaggagctatgacatggttcaaaagccttaaaccttgatctattgatttttg |
140 |
Q |
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||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |
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| T |
7975257 |
atacccactgtccagtgtaacgtaagttgttcgttttgaccctataagaaggagctatggcatggttcaaaagccttaaatcttgatctgttgatttttg |
7975356 |
T |
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| Q |
141 |
gatcggactatgcaagaggttcagagctcacttcacggccttgagaaacaaccgaagtccatagatagtttgggcacc |
218 |
Q |
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| T |
7975357 |
gatcggactatgcaagaggttcaaagctcacttcacggccttgagcaacaacaaaagtccatagatagttcgggcacc |
7975434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 213
Target Start/End: Original strand, 7983081 - 7983254
Alignment:
| Q |
41 |
atacccactatccagtgtagtgtatgttgttcgttttgaccctataagaaggagctatgacatggttcaaaagccttaaaccttgatctattgatttttg |
140 |
Q |
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||||||| | |||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7983081 |
atacccattgtccagtgtagtgtaagttgttcgttttgaccctatgagaaggagctatggcatggttcaaaagccttaaaccttgatctattgatttttg |
7983180 |
T |
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| Q |
141 |
gatcggactatgcaagagg-ttcagagctcacttcacggccttgagaaacaaccgaagtccatagatagtttgg |
213 |
Q |
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||| |||||||| |||||| |||| ||||||||||||| ||||||| |||||||||| |||||||||||||||| |
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| T |
7983181 |
gattggactatgtaagaggtttcaaagctcacttcacgaccttgagcaacaaccgaattccatagatagtttgg |
7983254 |
T |
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