View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9806_high_24 (Length: 207)

Name: NF9806_high_24
Description: NF9806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9806_high_24
NF9806_high_24
[»] chr6 (1 HSPs)
chr6 (1-202)||(17933277-17933479)
[»] chr3 (4 HSPs)
chr3 (1-148)||(32844322-32844469)
chr3 (13-90)||(23876952-23877029)
chr3 (40-88)||(25535250-25535298)
chr3 (158-202)||(32844482-32844526)
[»] chr8 (1 HSPs)
chr8 (21-79)||(11788405-11788463)
[»] chr7 (2 HSPs)
chr7 (25-90)||(366771-366836)
chr7 (21-90)||(7401966-7402035)
[»] chr1 (1 HSPs)
chr1 (25-75)||(42559898-42559948)
[»] chr5 (1 HSPs)
chr5 (25-90)||(27075893-27075958)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 17933479 - 17933277
Alignment:
Q  1 atcatgcacattgacacattagcatcactaacagagagattggacagagggatgaatttgactgacgtgtgttaaattcagggactaattaaaggacgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  ||||||||    
T  17933479 atcatgcacattgacacattagcatcactaacagagagattggacagagggatgaatttgacggacatgtgttaaattcagggactaattggaggacgaa 17933380  T
Q  101 tttgattagtccttacaaactcaaggacgaagttgatgtttcactccta-nnnnnnnnggtttgacactttgtgattcatacctttgttagcctatgcta 199  Q
    |||||||| ||||| |||||||||| |||||| ||||||||||||||||         |||||||||||||||||||||| ||||||||||||| || ||    
T  17933379 tttgattaatccttgcaaactcaagaacgaaggtgatgtttcactcctatttttttttggtttgacactttgtgattcatgcctttgttagcctttgtta 17933280  T
Q  200 ctc 202  Q
    |||    
T  17933279 ctc 17933277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 8e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 32844322 - 32844469
Alignment:
Q  1 atcatgcacattgacacattagcatcactaacagagagattggacagagggatgaatttgactgacgtgtgttaaattcagggactaattaaaggacgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| |||||||||||  ||||||||    
T  32844322 atcatgcacattgacacattagcatcactaacagagagattgggcagagggatgaatttgacggacatgtgttaaatttagggactaattggaggacgaa 32844421  T
Q  101 tttgattagtccttacaaactcaaggacgaagttgatgtttcactcct 148  Q
    |||||||| ||||| |||||||||||||||||||||||||||| ||||    
T  32844422 tttgattaatccttgcaaactcaaggacgaagttgatgtttcattcct 32844469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 23876952 - 23877029
Alignment:
Q  13 gacacattagcatcactaacagagagattggacagagggatgaatttgactgacgtgtgttaaattcagggactaatt 90  Q
    ||||| ||||| |||||||| ||| |||||||| |||||||||||||||  ||||| |||||||||||| ||||||||    
T  23876952 gacacgttagcctcactaacggagggattggacggagggatgaatttgatggacgtttgttaaattcagagactaatt 23877029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 25535250 - 25535298
Alignment:
Q  40 ttggacagagggatgaatttgactgacgtgtgttaaattcagggactaa 88  Q
    |||||| ||||||||||||||   ||||| |||||||||||||||||||    
T  25535250 ttggacggagggatgaatttggtggacgtctgttaaattcagggactaa 25535298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 32844482 - 32844526
Alignment:
Q  158 ggtttgacactttgtgattcatacctttgttagcctatgctactc 202  Q
    |||||||||||| ||||||||| ||||||||||||| || |||||    
T  32844482 ggtttgacacttagtgattcatgcctttgttagcctttgttactc 32844526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 11788463 - 11788405
Alignment:
Q  21 agcatcactaacagagagattggacagagggatgaatttgactgacgtgtgttaaattc 79  Q
    ||||||||||||||||| ||||||| |||||||||||||||  ||||| ||||||||||    
T  11788463 agcatcactaacagagatattggacggagggatgaatttgatggacgtctgttaaattc 11788405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 366836 - 366771
Alignment:
Q  25 tcactaacagagagattggacagagggatgaatttgactgacgtgtgttaaattcagggactaatt 90  Q
    |||||||| | | |||||||| |||||||||||||||  ||||| |||||||||||||||||||||    
T  366836 tcactaacggtgggattggacggagggatgaatttgatagacgtctgttaaattcagggactaatt 366771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 7402035 - 7401966
Alignment:
Q  21 agcatcactaacagagagattggacagagggatgaatttgactgacgtgtgttaaattcagggactaatt 90  Q
    |||||||||||| |||| ||||||  ||| |||||||||||  ||||| |||||||||||||||| ||||    
T  7402035 agcatcactaacggagatattggatggagtgatgaatttgatggacgtctgttaaattcagggacgaatt 7401966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 42559898 - 42559948
Alignment:
Q  25 tcactaacagagagattggacagagggatgaatttgactgacgtgtgttaa 75  Q
    ||||||||||||||||||||| |||||||||||||||  ||||| ||||||    
T  42559898 tcactaacagagagattggacggagggatgaatttgatggacgtctgttaa 42559948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 27075958 - 27075893
Alignment:
Q  25 tcactaacagagagattggacagagggatgaatttgactgacgtgtgttaaattcagggactaatt 90  Q
    |||||||| | | ||||| || |||||||||||||||  ||||| ||||||||||||| |||||||    
T  27075958 tcactaacggggggattgaacggagggatgaatttgatggacgtctgttaaattcaggaactaatt 27075893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University